Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2433 ATGAAGGTTTTCGTTAAGACTCTCAAAGGCACTCACTTCGAAATCGAAGTGACGCCGCAAGACACGGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTAATTCATCAAGGGAAAGTTCTTAGGGATGCTTCTACCTTGGAGGAGAATAAAGTAGTTGAAAATACTTTCATTGTAATTATGCTATCAAAGAGTAAGAGCCCATCCGGTGAAGGATCTACTACTTCAACTGCACCATCAACCAAGGCCCCACAGACAAGTACAGTTCCTGCTTCAACCCCTCCAGCGTCAGTAGTTCCTCAAGCTTCTGCTCCTGCTCCTGCTGCAACTGGGGCACTGCCTGCATCAGTTACTGCACCTATATCTTCACCTTCTCCTGCTCCAGCCCCAACTCCTGCTCCAGCCCCAACTCCTGCTCCTATATCTTCAGGAAATGCTGTGGAAGGGTCTGATATCTATGGGCAGGCTGCATCCAATCTGGTTGCTGGAAGCAACTTGGAGGGAACAATTCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGACAGGGATACCGTTGTCCGTGCTCTTCGAGCTGCCTACAACAACCCTGAGAGAGCTGTTGAATATTTGTATACAGGTATCCCCGAGCAAGCTGAAGCTCCACTTGTAGCCCAAGTGCCTGCAAGTGCTCAACCTACAAATCCTCCTGCTGATGCTCCACAAACAGCACAACCTGCTCCAGTTACCTCAGCTGGACCTAATGCTAATCCATTAGACCTTTTTCCCCAGGGTCTCCCTAACGTGGGTTCTGGTGCTGCTGGTGCTGGTTCATTAGACTTTTTACGCAATAGTCAACAATTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAGGTGCTGAAGGGAACATATTGGGGCAGATGGCTTCTGCGATGCCACAAGCAGTAACCGTCACTCCTGAGGAGCGGCAGGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAATCGTATTGGAGGTGTACTTCGCTTGTAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTGGATCACATGCATGAGTTCGAGGAACAATAG 1233 0.4785 MKVFVKTLKGTHFEIEVTPQDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLRDASTLEENKVVENTFIVIMLSKSKSPSGEGSTTSTAPSTKAPQTSTVPASTPPASVVPQASAPAPAATGALPASVTAPISSPSPAPAPTPAPAPTPAPISSGNAVEGSDIYGQAASNLVAGSNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPLVAQVPASAQPTNPPADAPQTAQPAPVTSAGPNANPLDLFPQGLPNVGSGAAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIRDHQADFLRLINEPAEGAEGNILGQMASAMPQAVTVTPEERQAIERLEAMGFDRAIVLEVYFACNKNEELAANYLLDHMHEFEEQ* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2433 410 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 409 - -
Gso10g2433 410 MobiDBLite consensus disorder prediction 77 111 - -
Gso10g2433 410 Gene3D - 357 404 - -
Gso10g2433 410 Pfam XPC-binding domain 284 340 IPR015360 GO:0003684|GO:0006289|GO:0043161
Gso10g2433 410 PRINTS DNA repair protein Rad23 signature 310 332 IPR004806 GO:0006289
Gso10g2433 410 PRINTS DNA repair protein Rad23 signature 359 375 IPR004806 GO:0006289
Gso10g2433 410 PRINTS DNA repair protein Rad23 signature 376 390 IPR004806 GO:0006289
Gso10g2433 410 PRINTS DNA repair protein Rad23 signature 391 406 IPR004806 GO:0006289
Gso10g2433 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 362 403 IPR015940 -
Gso10g2433 410 MobiDBLite consensus disorder prediction 133 151 - -
Gso10g2433 410 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Gso10g2433 410 MobiDBLite consensus disorder prediction 234 269 - -
Gso10g2433 410 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 409 - -
Gso10g2433 410 SUPERFAMILY Ubiquitin-like 1 81 IPR029071 -
Gso10g2433 410 SMART ubq_7 1 75 IPR000626 GO:0005515
Gso10g2433 410 SMART CBM 282 325 IPR006636 -
Gso10g2433 410 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Gso10g2433 410 SMART uba_6 365 402 IPR015940 -
Gso10g2433 410 SMART uba_6 178 218 IPR015940 -
Gso10g2433 410 SUPERFAMILY UBA-like 348 407 IPR009060 GO:0005515
Gso10g2433 410 MobiDBLite consensus disorder prediction 77 158 - -
Gso10g2433 410 Pfam UBA/TS-N domain 181 216 IPR015940 -
Gso10g2433 410 Pfam UBA/TS-N domain 365 400 IPR015940 -
Gso10g2433 410 Gene3D - 171 221 - -
Gso10g2433 410 TIGRFAM rad23: UV excision repair protein Rad23 1 408 IPR004806 GO:0006289
Gso10g2433 410 MobiDBLite consensus disorder prediction 234 257 - -
Gso10g2433 410 Gene3D - 1 80 - -
Gso10g2433 410 CDD UBA1_Rad23_plant 172 221 - -
Gso10g2433 410 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 176 219 IPR015940 -
Gso10g2433 410 Gene3D - 275 340 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gso10g2433 410 SUPERFAMILY XPC-binding domain 281 346 IPR036353 GO:0003684|GO:0006289|GO:0043161
Gso10g2433 410 CDD Ubl_Rad23 1 74 - -
Gso10g2433 410 SUPERFAMILY UBA-like 175 226 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2433 Gso-Chr10 51375777 51380078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2433 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.486 1.16e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2433 K10839 - gmx:100818012 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0911 20 38621349 38625469 Gso10g2433 10 51375777 51380078 GST