Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2430 ATGTCCGAGTTTCGAAAACAACCGGCTTCTAGACCGAAGCAAAAGCTTCGCCAACAGCACTCCTCGAAAGAGTCAAAGGCGATGAGAAAACTTCGCATCATTTGCGACGATCCTGATGCTACTGATTCATCCGAAGATGAGTCTGAGAGGGTTCAGAAGCCGAGAAGAGTAAAAAGAAGCGTGTTGGAGATGTCTCTTCCCCCTCTCCCTCAAACATTCACCACCACTACTCCTGAAACTAGCTCCTGTGAGGTGAATAGCAGCAAAAATGCAACATTGAAGGTTTGCACTGAAGGTCAACCCCAGAGCAAGAAGAGGGTTTTGACTCACACTCCATCAACGAGAAGGAGCACTTGTGGGAAATATAGAGGTGTTAGGCAGAGAAAATGGGGTAAATGGGCTGCAGAAATTCGTGACCCGTTTCAGTGTACTCGTATATGGCTTGGCACTTTCAACACTGCAGAAGAGGCTTCCAAAGCCTATGAAACCAGAAGGCTTGAGTTTGAAGCCATGGCAAAGACTCAAACTCTAAAAACTGGTTCTGAACCTTTGTCTACAACTTCTGATAAGAGTAACTGCTGTAACTCCTCTGCTGCTGCCGCCGCCGATGTGTCTGTGTCTGAAAAGTTTTCTACTACTTCTGATGACTCGGAAGAGAGTATGTTGTCACACAATTCACCATCCTCTGTGCTTGAGTTGGATACCTCGGCTTCCAAATCCGTTGAGAAGGGTAATGGTTCAACTGAGGAAGCTACTGGGGCTAATAATTTGGTGGCTGAACTTGCAGGGCTTGAGATACCAGATTTGAGTCTGTTGAACCTGCCACCACCACCATCTGTTGCTGCGGATGCTGCTGGGATTGAGCCAAATTTTGGGCTTGATTTTGATTGGCTGTCGTTTAATGATTATGGACAGGGTTTTGAGGATTTCGGTGGCTTGGAGAACATTCATATTGGTGGGTTTGATGACACTGAGCCTAGTGAGCTTCCTGACTTCGATTTTGGTGATTTTGGTGCTGATGAGTTTGCTGGTTGGATTGAGGAACCCCTCAATATACCTTGTGCCTAA 1068 0.4635 MSEFRKQPASRPKQKLRQQHSSKESKAMRKLRIICDDPDATDSSEDESERVQKPRRVKRSVLEMSLPPLPQTFTTTTPETSSCEVNSSKNATLKVCTEGQPQSKKRVLTHTPSTRRSTCGKYRGVRQRKWGKWAAEIRDPFQCTRIWLGTFNTAEEASKAYETRRLEFEAMAKTQTLKTGSEPLSTTSDKSNCCNSSAAAAADVSVSEKFSTTSDDSEESMLSHNSPSSVLELDTSASKSVEKGNGSTEEATGANNLVAELAGLEIPDLSLLNLPPPPSVAADAAGIEPNFGLDFDWLSFNDYGQGFEDFGGLENIHIGGFDDTEPSELPDFDFGDFGADEFAGWIEEPLNIPCA* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2430 355 CDD AP2 121 161 IPR001471 GO:0003700|GO:0006355
Gso10g2430 355 ProSiteProfiles AP2/ERF domain profile. 121 180 IPR001471 GO:0003700|GO:0006355
Gso10g2430 355 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Gso10g2430 355 MobiDBLite consensus disorder prediction 1 84 - -
Gso10g2430 355 SUPERFAMILY DNA-binding domain 121 168 IPR016177 GO:0003677
Gso10g2430 355 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 355 - -
Gso10g2430 355 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 13 355 - -
Gso10g2430 355 MobiDBLite consensus disorder prediction 205 252 - -
Gso10g2430 355 Gene3D AP2/ERF domain 120 176 IPR036955 GO:0003700|GO:0006355
Gso10g2430 355 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Gso10g2430 355 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Gso10g2430 355 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Gso10g2430 355 MobiDBLite consensus disorder prediction 17 60 - -
Gso10g2430 355 MobiDBLite consensus disorder prediction 67 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2430 Gso-Chr10 51331470 51334106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2430 23 354 AP2-EREBP Transcription Factor Family AT1G68550 34.897 5.34e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g2430 AP2 4.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2430 - - gmx:100306276 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0913 20 38692054 38694330 Gso10g2430 10 51331470 51334106 GST