Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2428 ATGAGTTCGGCTACTAAGAACGCGGCAAACGCGGTTGGGGCCAAAACGGCAAGAGCATGTGACAGCTGCATAACCAAACGTGCACGTTGGTACTGTGCTGCCGATGATGCTTTTCTCTGCCAGGCCTGCGACTCTTCTGTTCACTCCGCGAATCCTTTGGCTCGAAGACACGAACGAGTCCGCTTGAAAACGGCGTCCTACAAGTCCACTGATGAACAACAACAACAACAACAACAACCTCCCACGTGGCACACTAAGAAACCTCGAACGCCGAGGCACGGGAAACATTCTCGTAACAACAACCCTTTCCATTTGGTCCCTGAAGAGGGTTCGGAGGAGGCGAATTCCCATGATGAGAACGAGGAGCAGCTTCTTTATAGGGTCCCCATATTCGACCCTTTTGTTGCTGAGCTATGTGGGACTAATAGTTCTCCTTCTCCTGTTACTTCAACTGATCAAGGAGTAGTTGCTGCTGCTGAGGTTGAATACAAAGGGTTTCAAAGCAATGGTTTTTGTAGCAATAGCAGTGAGATGGAAAACTTGCATGGGATGCTTCCTTCTGATGCCGAACTTGCTGAGTTTGCTGCTGATGTGGAGAGCTTGTTGGGTAGGGGGCTTGAAAACGAGTGCGTGGGGATGGAAGAATTGGGATTGGTTGATGCGAAAGAGGAGGAGTGTTCGGTAGGTAGTGGGAAGGTGAAGATGGAAGATCAGGAAGAGAGCCCTCTGGTGGAGATGGAGATGGATATGGTCGTGGGCAGAGATGATCAATCGTTTGAGTTGAGCTTTGATTATGAAACGTGTGAAGAGGTGAAGGTTTGTGATTTGGGATTGGGGAATGAATTAGGAGCGAAGAAAGAGAATGATGATGAGGTGAAAAAGAACAAGATTTCGTTGCAGCTAGACTATGAGGCGGTAATCATCGCCTGGGCTAGCCAAAAATCTCCGTGGACCACCGCTGACAAACCAAACTTGGACCCTGATGAGTGCTGGAAACAATGCATGGGAAGTTGCGAAACGGCATATCATCATCCTTGCGGTGAAATGGGTGGATTTGGGATTCATCCAGTGATAATAGACGGGGGCAGAGAGGCGAGGGTGTCAAGATACAGAGAGAAGCGCCGAACGAGGTTGTTCTCGAAGAAAATAAGGTACGAAGTTAGGAAATTGAATGCTGAGAAGAGACCCAGAATGAAGGGGAGGTTTGTCAAGAGGGCTTCCTTTGCACCACCAACATTTCCTTTGCTAAATAAATAA 1257 0.4829 MSSATKNAANAVGAKTARACDSCITKRARWYCAADDAFLCQACDSSVHSANPLARRHERVRLKTASYKSTDEQQQQQQQPPTWHTKKPRTPRHGKHSRNNNPFHLVPEEGSEEANSHDENEEQLLYRVPIFDPFVAELCGTNSSPSPVTSTDQGVVAAAEVEYKGFQSNGFCSNSSEMENLHGMLPSDAELAEFAADVESLLGRGLENECVGMEELGLVDAKEEECSVGSGKVKMEDQEESPLVEMEMDMVVGRDDQSFELSFDYETCEEVKVCDLGLGNELGAKKENDDEVKKNKISLQLDYEAVIIAWASQKSPWTTADKPNLDPDECWKQCMGSCETAYHHPCGEMGGFGIHPVIIDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFAPPTFPLLNK* 419
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2428 418 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Gso10g2428 418 MobiDBLite consensus disorder prediction 67 85 - -
Gso10g2428 418 ProSiteProfiles CCT domain profile. 363 405 IPR010402 GO:0005515
Gso10g2428 418 MobiDBLite consensus disorder prediction 66 120 - -
Gso10g2428 418 SMART bboxneu5 15 62 IPR000315 GO:0008270
Gso10g2428 418 CDD Bbox1_BBX-like 19 62 - -
Gso10g2428 418 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 411 - -
Gso10g2428 418 Pfam CCT motif 363 405 IPR010402 GO:0005515
Gso10g2428 418 Pfam B-box zinc finger 17 60 IPR000315 GO:0008270
Gso10g2428 418 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 411 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso10g2428 Gso-Chr10 51293823 51295895 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2428 6 405 C2C2-CO-like Transcription Factor Family AT1G25440 46.154 3.49e-104 313
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso10g2428 zf-B_box 8.6e-08 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2428 - - gmx:100782921 842.032
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0915 20 38737256 38739419 Gso10g2428 10 51293823 51295895 GST