Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2425 ATGAGACCAGAACGAAACCCATTAGATCTTAACAATTTGCCCGATGAGTACTCTAGGGATGGCAAACAAGTCCTCGAAGACCATACCTCTTCACCCGGTTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGGGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTACAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAAACGGAGACGCTGAACCAGGCTCGTCAACTGGTATTTCGTAGCGATCATATCATTGCTCCACAAGGTGCCCCTCACTTAGGATGCTGCCAGCCAATAGGAACGGGGGGTTATCACCCATCAGGAGACCCAACAGTGCCTCTAAGATTCCCGAGATACTTCTCAGGTTCATCCTCAACTCACATGCCACCACCGCCGCCGCCGCCGCCGCCACCGCAACAATCACACCTATACCCATCACCTTCGAGGCCAGTGTCATTTGGGTCATCACACTTCCCCCACCAGCATGCTGTGAACGATTACTATGTGGGCCACGTGATGAGTGGTGGGAGCCACGGACACTATGTTGGAGGAGAGAGCACGAGTAGTTACACGTACATTGGTGCCCCGGTGGGGCAAGCTGGTGGATTCGCTGGTGGTGGTAAGGAGGGGTCAGCAGTGCAGGAGGAAGGGTTGAGTTGGGGAAGGAGCTATTCAGGAGGAGCACAGCATCGTTTGGATCCTCCCTCAGCGATCAATCGGTTTCATGATGGTTTCTAA 774 0.5349 MRPERNPLDLNNLPDEYSRDGKQVLEDHTSSPGCRKKKSGGKDGKDECGKVYECRFCSLKFYKSQALGGHMNRHRQERETETLNQARQLVFRSDHIIAPQGAPHLGCCQPIGTGGYHPSGDPTVPLRFPRYFSGSSSTHMPPPPPPPPPPQQSHLYPSPSRPVSFGSSHFPHQHAVNDYYVGHVMSGGSHGHYVGGESTSSYTYIGAPVGQAGGFAGGGKEGSAVQEEGLSWGRSYSGGAQHRLDPPSAINRFHDGF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2425 257 Gene3D Classic Zinc Finger 29 101 - -
Gso10g2425 257 MobiDBLite consensus disorder prediction 1 46 - -
Gso10g2425 257 SUPERFAMILY beta-beta-alpha zinc fingers 50 80 IPR036236 -
Gso10g2425 257 MobiDBLite consensus disorder prediction 15 46 - -
Gso10g2425 257 MobiDBLite consensus disorder prediction 118 169 - -
Gso10g2425 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Gso10g2425 257 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Gso10g2425 257 PANTHER ZINC FINGER PROTEIN JAGGED 1 233 IPR045320 GO:0003700
Gso10g2425 257 PANTHER ZINC FINGER PROTEIN JAGGED 1 233 IPR031113 GO:0007275
Gso10g2425 257 MobiDBLite consensus disorder prediction 138 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2425 Gso-Chr10 51241366 51243927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2425 4 216 C2H2 Transcription Factor Family AT1G13400 42.202 9.69e-34 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2425 - - gmx:102664687 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0920 20 38797819 38800244 Gso10g2425 10 51241366 51243927 GST