Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2419 ATGTCCACAATTGCAAAGAGAGATTTGAGTTCTAATGAAGAAGAGAGTGAGCTGAGAAGAGGTCCTTGGACTCTTGAAGAAGACAGCTTACTCATACACTATATTGCTCGTCATGGTGAAGGCCGTTGGAATATGTTAGCCAAAAGTGCAGGATTGAAGAGGACTGGAAAAAGTTGCAGACTTAGATGGCTGAATTATTTGAAACCAGACATTAAGAGAGGGAACCTCACTCCACAGGAGCAACTCTTGATCCTTGAACTCCATTCCAAGTGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTGCCAGGAAGAACAGACAATGAGATCAAGAACTATTGGAGAACAAGGATACAGAAACAGGCACGCCAACTTAACATTGAATCTGGTAGCAAGAGATTCATTGATGCTGTCAAGTGTTTTTGGATGCCAAGATTGCTCCAAAAGATGGAACAGAGCAATTCTCCAAGCCCTCATCACTCTTCCATGACAAACATGATGAATTTAGGGAATTCCGGAGAAGCTTCTATGAGTTCAATGTCAAGCAGCTTCAATATTAATCCTTCTATGTCTTCTTCCTCATCTCCTCCACAAAGGGAATTTATTATGGATGATGCAAATCATTTTAATACTATGTCCAACCCCATCAATCCATCCCCAGATTCCTTCCAATTTTCACAGCTACTTGAAATTTCTGAACACCCCAAAAGTCCTTCAAATGTGTTTGAGAACAATGTTTGCAGTTATCCAATCCAGGACAATTGCTATGTTGATACCAATAACTATGGCATGGAAGGCATAAACATGGATCCCCTTTCAGCAATGGATACTTACGACTTCCCACAGTTTGATTTTCAGACAGCAGGAAATGGATGGATGCTAGACAGCATGGGGGATTCTACTTTATGGAACATGGAGGCTATGTGA 927 0.4132 MSTIAKRDLSSNEEESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQSNSPSPHHSSMTNMMNLGNSGEASMSSMSSSFNINPSMSSSSSPPQREFIMDDANHFNTMSNPINPSPDSFQFSQLLEISEHPKSPSNVFENNVCSYPIQDNCYVDTNNYGMEGINMDPLSAMDTYDFPQFDFQTAGNGWMLDSMGDSTLWNMEAM* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2419 308 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 35 44 IPR001345 GO:0003824
Gso10g2419 308 PANTHER TRANSCRIPTION FACTOR MYB21-LIKE 6 307 - -
Gso10g2419 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Gso10g2419 308 MobiDBLite consensus disorder prediction 1 20 - -
Gso10g2419 308 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Gso10g2419 308 SMART sant 19 69 IPR001005 -
Gso10g2419 308 SMART sant 72 120 IPR001005 -
Gso10g2419 308 Gene3D - 76 119 - -
Gso10g2419 308 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 6 307 IPR044676 GO:0003700|GO:0006355|GO:0043565
Gso10g2419 308 CDD SANT 77 116 IPR001005 -
Gso10g2419 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Gso10g2419 308 MobiDBLite consensus disorder prediction 151 197 - -
Gso10g2419 308 CDD SANT 22 67 IPR001005 -
Gso10g2419 308 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Gso10g2419 308 Gene3D - 17 73 - -
Gso10g2419 308 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Gso10g2419 308 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Gso10g2419 308 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2419 Gso-Chr10 51143777 51145281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2419 15 283 MYB Transcription Factor Family AT1G68320 50.871 1.02e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso10g2419 Myb_DNA-binding 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2419 K09422 - gmx:100780759 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0928 20 38934504 38936254 Gso10g2419 10 51143777 51145281 GST