Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2408 ATGAACATCTTCTTTAACCTCAGATCCCTCTCTTCTCCCCTGATTCTCTCCTACATCATCATCTTCTATCTCCTTGCCAAAAACACCTCCTGTGATGTGGACCCAAACTTTCTTGCATGTACACCCACAACCTGCGCCAACAACAATCAAAGTATAAGTTATCCGTTTTACATCGAAGGAAAACAAGAACCTTTTTGTGGGAATCCCGGTTTTGGCATCTCTTGTGGTCCAAAGGGTTTTCCAATCCTTAATCTGTCTAATACCATATACATCATTCACCATATATTCTACGAAAATCAGACACTTCGAGTGGCCAATGCCGCGTTTTCAGCTTCACGACAAAACACCACCAATTCCAAAGGTTGTCTTCCTCTTCCTCTTACTCACAATCTCACTCTTCCTAGTACCCGCGAGTTCGATATTGCTCCGAATCAAACAGACATTAGATTGTTCTACGGCTGTGGGTCATTGCCTTGGCTGGAAGAGCACAAAGTTGGGTGCTTTAACGAAACGAGTTCAGTTCTGGCATTGTATAAAGAGGATAAAAATATAAGTTTTGTGTCAAAGAATTGCAAGGGCGAGGTTGTGGATACGATAGTGGAAGATGGAATAATAGGAGGGAATGAAGAAGCGTTGACAAAAGGGTTTTTGCTGACGTGGAAGGCCGGTAACTGCAGCGTGTGCCACAACACTGGAGGGAGGTGCGGCTTCGATTTCGTCATGTACACTTTCAGGTGCTTCTGCACTGACAGTGTTCATTCTGCCATATGTGATCCTGATGATGATCCAGTTGGGACAAAAGGGTCGAGTTTGAAGGCCAGACTGCGTATAGTTGTAAAGAAAGGGTTGAGCTTGAAGGCCAAACTGGGCATAGCTTCGGTCGTGGTAGGGGCTGCTGGAGTTGCTGTTCTGCTGATGGTCTTGGCTTGCTGTTTTAGGAAAAACCTTTTTAGGAGGGAGAACCCAACCCATCGGATTATTGAAGGGTTTTTGAAGGAACATGGGCCCCTTCCTACAGCTAGGTACAGTTATTCAGAGGTTAAGAAACTGACTAATTCTTTTAGAAAGCAATTAGGCCAAGGGGGATTCGGTAGTGTATACAAAGGGCAATTACATGATGGTCGTGCTGTTGCGGTGAAGATTTTAAATAAATCAGGAGGCAACGGAGAAGAATTCATCAATGAAGTTGCAAGTATTAGCAGGACTTCACATGTCAACATTGTTAGACTATTGGGATTCTGTTTAGATAGTTCTAAACGGGCTCTAATATACGAGTTTATGCCTAATGGATCTCTTGACAGGTTTATATATGAAGAGAAAAATCCACTACAGGTTGCTCACCAATTGGATTGCAAACAATTGTATGATATTGCAATTGGCATTGCTCGTGGATTAGAGTACTTACACAGAGGTTGCAACACTAGAATCTTGCATTTTGACATAAAACCTCACAATATATTACTAGATGAAGATTTCTGCCCAAAAATATCAGATTTTGGACTTGCAAAACTATGTCCAAGAAAAGAAAGTGCGGTATCAATATTTGGTGTTAGAGGAACCGCTGGCTATATTGCCCCAGAAATTTTTTCCAGGAATTTTGGTGCAGTATCACATAAGTCAGATGTCTACAGTTATGGAATGATGGTCCTGGAAATGGTTGGAATGAAAACTAATATTAAGGCTGAAGTAAGCCGCTCAAGTGAAATATATTTTCCTCAATGGATTTACAATTGTATTGAATCAGATCAAGAACTTGGTCTGCAAAATATAAGAAATGAAAGTGATGACAAAATGGTGAGAAAGATGATAATAGTGGGCTTATGGTGTATACAAACCAACCCTTCAACCCGACCGGCCATTAGTAAAGTGGTGGAAATGCTAGACAGTGAAGTTGAGTTATTACAAATTCCACCTAAACCTTGTTTATCTTCCTATTCAACCTCTCCAGTTCATTTGTCATGTGAGACATTGTAA 1974 0.4119 MNIFFNLRSLSSPLILSYIIIFYLLAKNTSCDVDPNFLACTPTTCANNNQSISYPFYIEGKQEPFCGNPGFGISCGPKGFPILNLSNTIYIIHHIFYENQTLRVANAAFSASRQNTTNSKGCLPLPLTHNLTLPSTREFDIAPNQTDIRLFYGCGSLPWLEEHKVGCFNETSSVLALYKEDKNISFVSKNCKGEVVDTIVEDGIIGGNEEALTKGFLLTWKAGNCSVCHNTGGRCGFDFVMYTFRCFCTDSVHSAICDPDDDPVGTKGSSLKARLRIVVKKGLSLKAKLGIASVVVGAAGVAVLLMVLACCFRKNLFRRENPTHRIIEGFLKEHGPLPTARYSYSEVKKLTNSFRKQLGQGGFGSVYKGQLHDGRAVAVKILNKSGGNGEEFINEVASISRTSHVNIVRLLGFCLDSSKRALIYEFMPNGSLDRFIYEEKNPLQVAHQLDCKQLYDIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDEDFCPKISDFGLAKLCPRKESAVSIFGVRGTAGYIAPEIFSRNFGAVSHKSDVYSYGMMVLEMVGMKTNIKAEVSRSSEIYFPQWIYNCIESDQELGLQNIRNESDDKMVRKMIIVGLWCIQTNPSTRPAISKVVEMLDSEVELLQIPPKPCLSSYSTSPVHLSCETL* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2408 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Gso10g2408 657 Pfam Wall-associated receptor kinase C-terminal 182 250 IPR032872 -
Gso10g2408 657 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Gso10g2408 657 Pfam Wall-associated receptor kinase galacturonan-binding 40 105 IPR025287 GO:0030247
Gso10g2408 657 PANTHER RUST RESISTANCE KINASE LR10-RELATED 24 653 IPR045874 GO:0004672
Gso10g2408 657 Pfam Protein kinase domain 355 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2408 657 SMART serkin_6 352 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2408 657 ProSiteProfiles Protein kinase domain profile. 352 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2408 657 Gene3D Phosphorylase Kinase; domain 1 332 426 - -
Gso10g2408 657 SUPERFAMILY Protein kinase-like (PK-like) 336 627 IPR011009 -
Gso10g2408 657 Gene3D Transferase(Phosphotransferase) domain 1 427 635 - -
Gso10g2408 657 PANTHER - 24 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2408 Gso-Chr10 50996806 51001317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2408 9 653 Receptor kinase-like Gene Family AT1G66910 37.372 2.03e-139 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Gso10g2408 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2408 - - gsj:114369336 1303.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0941 20 39096770 39099682 Gso10g2408 10 50996806 51001317 GST