Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2404 ATGGTTTTCCAATCCTTAATCTGTCTATACCCAATACATCATTCACCAAATATTTACGAAAATCAGACACTTCGAGTGTCCAATACCGCGTTTTCAGTTTCACGACCAAACACCACCAATTCCAAAGGTTGTCTTCCTCTTCCTCTTACTCAGAATCTCACTCTTCCTAGTACCCGCGAGTTCGATATTGCTCCGAATCAAACAGACATTAGATTGTTCTACGGCTGTGGGTCATTGCCTTGGCTAGAAGAGCACAAAGTTGGGTGCTTTAACGAAACGAGTTCAGTTCTGGCATTGTATAAAGAGGATAAAAATATAAGTTTTGTGTCAAAGAATTGCCAGGGCGAGGTTGTGGATACGATAGTGGAAGATGGAATAATAGGAGGGAATGAAGAAGCGTTGACAAAAGGGTTTTTGCTGACGTGGAAGGCCGGTAACTGCAGCGTGTGCCACAACACTGGAGGGAGGTGCTTCTGCACTGACAGAGTTCATTCTGCCAAATGTGGTCCTGATGATGATCCAGAAGTTGTTTTTAGGCAGACGTTTAGTTTCACAAGTTCACACAGAGACAGAGAGAGTACTAGAAAACTGAGAAATGAGGCCCAGAAATTTGAAGCCACTGATTATGACACTGAACGCGTTTTCTATCTGGCCTCGTTGACTGGTCACGTTGAAGTGAAGTGTGAACCTAACCGCTTAAAACGACATCACCATTCGTTAACGTTGTCTAATTGCCTTATTATTTCCCACACTCTTTCAACGTCATTCGAACGCCCCGACTGTGGCTTTTTACCCATACGGAATTGTGAAGATCCACTCCAGTTCAAAATGATCCAATTACAGAATAATGGAGAATGGTTTCGGGTTGTACTCGTAGCTCAGCTTCGGAACAGTTCTATCATAACTTTTCAAATTAGAGACAAACATCTCTATGACCTTCTGCAGAACGAAAGTTGTGAAGCTTTCAGATACAATTATACTATTCCTCCCTTCTTTCACTTTGCTGCTTTACGTATCCAATACCACACAACTCTGTTCAGGTGCAAGCGCAGCCTCCATGTCAGCCCTCCCACGGGCATGCTTAATTATACAAAATGCCCCGACTACGATCTCTACTACAAGCACATCATCACGGCTGATGATGTGTCTCGGAGTTCTTTGGTGGCATGTACAGAGGTCCAGCTTCCAATTAAAGACGTGCCTGACGCTATAAACCCATTTACCTTTGTAACTGCAGATATCATCATTCGAGTAGACTTAACTGATGAATGTGCAGATTGCAACTATCGCCATGGAGGGCAGTGCAAACTTGACAGCACAGAGAAATTTTGTTGTGCCAATGCAGTTATAAAGAAAGGGTTGACTTTGAAGGCCAAACTGGGTATAGGTTTAGGTATTGGAATCCCAAGCATGTTGGCAATTGGGTTGCTGTTTCTCTTTCTACAATACAAACGAAAATATGGTACCTCAGGCGGACAATTGGAGTCAAGAGATTCTTATTCTGATTCCTCCTCAAATCCTCATGGAGAAAGTAGTAGCGAGTACTTTGGAGTTCCACTCTTCTTGTACGAGCAGCTTAAAGAAGCGACAAACAATTTCGATCACACCAAAGAACTTGGAGACGGAGGCTTCGGTACTGTCTACTATGGGAAACTCCCAGATGGACGTGAAGTTGCCGTGAAGCGCTTATACGAGCACAACTGGAAGCGAGTAGAACAGTTCATAAACGAAGTTAAGATCCTCACACGTTTGCGTCACAAAAATCTTGTGTCACTCTACGGCTGCACTTCACGGCACAGCCGTGAACTCCTACTTGTGTATGAATACATTTCAAACGGCACTGTAGCGTGTCATCTCCATGGTGGATTAGCGAAGCCTGGCTCCCTACCATGGTCTACACGAATGAAAATTGCCGTAGAGACTGCTAGTGCATTGGCTTATCTCCACGCCTCTGACATCATTCACCGTGACGTGAAAACAAACAATATTCTCCTCGACAACAACTTTTGTGTTAAGGTAGCAGATTTTGGACTTTCAAGAGACGTCCCCAACGATGTCACACATGTCTCCACAGCTCCACAAGGGTCCCCAGGTTACCTTGACCCTGAATATTACAATTGCTATCAGCTTACTAGTAAGAGTGATGTGTATAGTTTTGGGGTTGTGCTTATTGAGCTAATATCATCCAAGCCCGCTGTTGATATGAACAGGAGCAGGGATGAGATTAACTTGTCAAATCTAGCCGTAAGGAAGATTCAAGAAAGTGCAGTTAGTGAGTTGGTTGATCCTTCTCTTGGTTTTGATTCAGATTGTAGGGTTATGGGGATGATAGTTTCAGTGGCAGGGTTGGCTTTTCAGTGTTTGCAAAGGGAAAAGGACTTGAGACCTTCTATGTATGAAGTGTTACATGAACTGAGGAGAATTGAGAGTGGGAAGGATGAGGGAAAGGTTCGAGATGAGGGTGATGTTGATGGTGTTGCAGTTTCACATAGTTGTGCACATTCACCACCACCAGCCTCACCTGAGTGGGAAGAAGTTGGATTGTTGAAGAATATAAAGCCTACTTCCCCAAACACTGTCACTGATAAATGGGAAAGTAAATGTACTACGCCTAATATCAGTGGTTAA 2628 0.4365 MVFQSLICLYPIHHSPNIYENQTLRVSNTAFSVSRPNTTNSKGCLPLPLTQNLTLPSTREFDIAPNQTDIRLFYGCGSLPWLEEHKVGCFNETSSVLALYKEDKNISFVSKNCQGEVVDTIVEDGIIGGNEEALTKGFLLTWKAGNCSVCHNTGGRCFCTDRVHSAKCGPDDDPEVVFRQTFSFTSSHRDRESTRKLRNEAQKFEATDYDTERVFYLASLTGHVEVKCEPNRLKRHHHSLTLSNCLIISHTLSTSFERPDCGFLPIRNCEDPLQFKMIQLQNNGEWFRVVLVAQLRNSSIITFQIRDKHLYDLLQNESCEAFRYNYTIPPFFHFAALRIQYHTTLFRCKRSLHVSPPTGMLNYTKCPDYDLYYKHIITADDVSRSSLVACTEVQLPIKDVPDAINPFTFVTADIIIRVDLTDECADCNYRHGGQCKLDSTEKFCCANAVIKKGLTLKAKLGIGLGIGIPSMLAIGLLFLFLQYKRKYGTSGGQLESRDSYSDSSSNPHGESSSEYFGVPLFLYEQLKEATNNFDHTKELGDGGFGTVYYGKLPDGREVAVKRLYEHNWKRVEQFINEVKILTRLRHKNLVSLYGCTSRHSRELLLVYEYISNGTVACHLHGGLAKPGSLPWSTRMKIAVETASALAYLHASDIIHRDVKTNNILLDNNFCVKVADFGLSRDVPNDVTHVSTAPQGSPGYLDPEYYNCYQLTSKSDVYSFGVVLIELISSKPAVDMNRSRDEINLSNLAVRKIQESAVSELVDPSLGFDSDCRVMGMIVSVAGLAFQCLQREKDLRPSMYEVLHELRRIESGKDEGKVRDEGDVDGVAVSHSCAHSPPPASPEWEEVGLLKNIKPTSPNTVTDKWESKCTTPNISG* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2404 875 MobiDBLite consensus disorder prediction 492 512 - -
Gso10g2404 875 ProSitePatterns Protein kinases ATP-binding region signature. 539 561 IPR017441 GO:0005524
Gso10g2404 875 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 245 874 IPR044652 -
Gso10g2404 875 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 15 186 IPR044652 -
Gso10g2404 875 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 245 874 - -
Gso10g2404 875 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 15 186 - -
Gso10g2404 875 MobiDBLite consensus disorder prediction 490 512 - -
Gso10g2404 875 SUPERFAMILY Protein kinase-like (PK-like) 507 805 IPR011009 -
Gso10g2404 875 Pfam Protein tyrosine and serine/threonine kinase 536 759 IPR001245 GO:0004672|GO:0006468
Gso10g2404 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 653 665 IPR008271 GO:0004672|GO:0006468
Gso10g2404 875 Pfam Wall-associated receptor kinase C-terminal 103 168 IPR032872 -
Gso10g2404 875 Gene3D Transferase(Phosphotransferase) domain 1 610 830 - -
Gso10g2404 875 Gene3D Phosphorylase Kinase; domain 1 505 609 - -
Gso10g2404 875 ProSiteProfiles Protein kinase domain profile. 533 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2404 875 SMART serkin_6 533 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2404 875 MobiDBLite consensus disorder prediction 854 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2404 Gso-Chr10 50945241 50955496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2404 250 875 Receptor kinase-like Gene Family AT1G25390 46.855 2.44e-167 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Gso10g2404 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2404 - - gmx:100305407 1725.29