Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2397 ATGGAATCAAACACATCAAGCTTTCTTTTGAACTCTTCAACTTTGCACTCAGTTTTCTACCAAGACAAACAAGATGATGGCATAATTGATCTGGGTCTTAGTCTCGGAACTGTTCAACATGAAGCTTACCATTCTTCTGCCAACTTGTATGATGAAGACCTTATGGATTGGCCTCACTCCAATCTCAATCTAAAGAATTCGAGCACAATGCATTCTAGATCTGCCCACCACCAAAATTTTGATGAAGAGATAGAGGGGGTCCAGAGCAATGAGAGGTGGGCTTATGTGAAGGTTAACATGGATGGGGTTACCATTGGTAGGAAAATTTGTGTACTTGATCATGGTGGATACTCAAGTCTGGCACTCCAATTAGAAGACATGTTTGGAAGCCATTCTGTTTCTGGATTACGATTGTTCCAATCGGGATCAGAGTACTCATTGTTCTACAAGGACAGACAAGATAATTGGAGGCCTGTCGGTGATGTACCATGGAAAGAGTTTATAGAATGTGTGAAGCGGTTGAGGATTGCAAGAAAGAATTCGGGCATTGTTTCCTGTTCATCAAGATACACCTAA 576 0.4132 MESNTSSFLLNSSTLHSVFYQDKQDDGIIDLGLSLGTVQHEAYHSSANLYDEDLMDWPHSNLNLKNSSTMHSRSAHHQNFDEEIEGVQSNERWAYVKVNMDGVTIGRKICVLDHGGYSSLALQLEDMFGSHSVSGLRLFQSGSEYSLFYKDRQDNWRPVGDVPWKEFIECVKRLRIARKNSGIVSCSSRYT* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2397 191 Gene3D - 87 188 - -
Gso10g2397 191 ProSiteProfiles PB1 domain profile. 93 181 IPR000270 GO:0005515
Gso10g2397 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 181 IPR003311 GO:0005634|GO:0006355
Gso10g2397 191 Pfam AUX/IAA family 53 180 IPR033389 -
Gso10g2397 191 PANTHER AUXIN-RESPONSIVE PROTEIN IAA34 1 181 - -
Gso10g2397 191 SUPERFAMILY CAD & PB1 domains 93 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2397 Gso-Chr10 50877904 50879328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2397 83 179 B3 DNA Binding Superfamily AT1G34310 32.990 2.38e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Gso10g2397 AUX_IAA 3.2e-23 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2397 K14484 - gmx:100777024 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0962 20 39338597 39339522 Gso10g2397 10 50877904 50879328 GST