Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2388 ATGCATAACAAGGACGCTTGCTCTCCCTCCTCCAATGGCGGATTCGGCGGCGGCGCCTCCGCCGGTCAAATTCCGTCAACCGGCGGCCTCTACAGTTCTCTGTACTCGGCACTGTCGAACGAGAACCTTCCATCGCTCTCCGCGAGCTGCAGCAACGGAAGCGGCGGCGGCGTTTCGATGTATCCTTACTCGGAGTCAATTCAGAAGCACCAGGACATGGTGAACCGTCAAAGCATGTGTCTGAATCGCCTCGTTGAAACTTCGAAGGAGGTGGAGGCTCTGAGGGAGGAGAATGGCCTGCTCCGAGCTGCGAACAAGGAGCTCCAGAAGCAGCTGCACCTCGTTATCCAGGCTTCGCTGGAGAATCACTACGGCGGCGGCGACGGAGGCTCCTCCGGCCAGACGCAACCGACTCTGTTCAATGTTTTGCATGGCTTCCGCGGCCTCCACATTGGGGAAGGGAATAAAGAGAATTATGCCGATTGGAATAACAATAATCTCAATATCATGAATAATAATAGCAGCAACAATAAGGAGCTGCAGGAGATTTCGGAGGAGAGTCCAACAAGCGTGATTGAGAATAACAACGTGGTGGAAGTGGAGAGGTTCTCGCTCCCTAAGAGCATTTCTGTGAGGTCCAATGGCTACTTGAAGACGGCTCAGTCCGCTGCCCTCGCCCCCAATAACAACAATGCCACTCGCAACAAAGGCGCCACTCGCCCACGCGCCTCCGCCACTCCACCTGAACCCGTTCAAAAGGTATATGTGCGTGGAGGGCAGAAAGAGGAAGAGCCTCTTGAAATGATAGTGTATAACCAAGGGATGTTCAAGACTGAGCTGTGTAATAAGTGGCAGGAAACTGGAACATGTCCATATGGAGACCACTGCCAATTTGCTCATGGTATTGGGGAGCTTCGCCCAGTGATCCGCCACCCACGCTACAAAACTGAAGTCTGCAGAATGGTCCTTGCTGGGGTTGTGTGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTTACTGAACAAGAGAAAGCTGTCGTATCACAGCCTAAGCCCAGATCAATGAAGCTCGAAAGATAA 1083 0.5309 MHNKDACSPSSNGGFGGGASAGQIPSTGGLYSSLYSALSNENLPSLSASCSNGSGGGVSMYPYSESIQKHQDMVNRQSMCLNRLVETSKEVEALREENGLLRAANKELQKQLHLVIQASLENHYGGGDGGSSGQTQPTLFNVLHGFRGLHIGEGNKENYADWNNNNLNIMNNNSSNNKELQEISEESPTSVIENNNVVEVERFSLPKSISVRSNGYLKTAQSAALAPNNNNATRNKGATRPRASATPPEPVQKVYVRGGQKEEEPLEMIVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAVVSQPKPRSMKLER* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2388 360 ProSiteProfiles Zinc finger C3H1-type profile. 275 303 IPR000571 GO:0046872
Gso10g2388 360 Coils Coil 84 111 - -
Gso10g2388 360 Gene3D - 270 308 - -
Gso10g2388 360 Gene3D - 309 345 - -
Gso10g2388 360 SUPERFAMILY CCCH zinc finger 272 307 IPR036855 GO:0046872
Gso10g2388 360 SUPERFAMILY CCCH zinc finger 309 343 IPR036855 GO:0046872
Gso10g2388 360 MobiDBLite consensus disorder prediction 221 250 - -
Gso10g2388 360 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872
Gso10g2388 360 SMART c3hfinal6 275 302 IPR000571 GO:0046872
Gso10g2388 360 SMART c3hfinal6 313 340 IPR000571 GO:0046872
Gso10g2388 360 MobiDBLite consensus disorder prediction 221 240 - -
Gso10g2388 360 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 61 350 - -
Gso10g2388 360 PANTHER CCCH ZINC FINGER/TIS11-RELATED 61 350 IPR045877 GO:0003729
Gso10g2388 360 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 301 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2388 Gso-Chr10 50779012 50782225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2388 32 355 C3H Transcription Factor Family AT1G68200 46.847 1.94e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso10g2388 zf-CCCH 2.9e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2388 K18753 - gmx:100819250 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0973 20 39436848 39440121 Gso10g2388 10 50779012 50782225 GST