Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2387 ATGGGTTTGCAAAACCAATTAAACGACGTGTCGTCGGGTTCGATTCCGCTTCTGGTGTTGGCGCAGATAGCCACCTGCGTCAACTACCTCCGCTCCATGCTTTTCGCGCTTTTGCAAACCCTAGGTCTCAGCCGATTCCACTCCGACCAGATCGTCGACGAGCGCTTCCTCGCCGCCGTCGGATCCGGCCTCGCCGGACTTATCATGCTCTCCGATCAGCTCACCCTCAGTAGCCAATTCTTCCACCATCACCACGGCACCGCCGCCGGCCACGACCACGACCACCACCCCTGCGTCGTGTGCCAGGCCACCTTCGAGGACGGCGACCAGGTCCGCATGCTCCCCTGCCGCCACGTCTTCCACCGCCGATGCTTCGACGGCTGGCTCCACCACTACAAGTTCAACTGCCCACTCTGCCGCTCTCCGCTCTTCTCCGACGAGCGCGTGGCACTCACGGAGCGCCGCCTCGGCCAGCAACTCATCTCTTGGTTCTCCCTACACTGA 504 0.621 MGLQNQLNDVSSGSIPLLVLAQIATCVNYLRSMLFALLQTLGLSRFHSDQIVDERFLAAVGSGLAGLIMLSDQLTLSSQFFHHHHGTAAGHDHDHHPCVVCQATFEDGDQVRMLPCRHVFHRRCFDGWLHHYKFNCPLCRSPLFSDERVALTERRLGQQLISWFSLH* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2387 167 SMART ring_2 98 139 IPR001841 -
Gso10g2387 167 SUPERFAMILY RING/U-box 93 146 - -
Gso10g2387 167 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Gso10g2387 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 165 - -
Gso10g2387 167 Pfam Ring finger domain 98 140 IPR001841 -
Gso10g2387 167 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHA2A 1 165 - -
Gso10g2387 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 149 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2387 Gso-Chr10 50749456 50750415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2387 1 167 C3H Transcription Factor Family AT1G15100 47.305 3.52e-45 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2387 K16282 - gmx:100803789 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g0974 20 39482296 39483269 Gso10g2387 10 50749456 50750415 GST