Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2374 ATGTCCTCTGCAAAAACACCAAGGTCTGCTTCGCCTTCTCCTGTTAGAAGCCGTCGAAGTCGATCAAAGTCATTATCAAGGTCCAGGAGAAGTCGTTCCAGGAGTCAAGATTCTGCTGATGTGGAGAATCCTGGAAATAATTTGTATGTTACAGGCTTGTCCACAAGGATAACTGACAGTGATCTTCACAAGTATTTCAGTAAAGAGGGAAAGGTTGTCGACTGCCACTTAGTAAAAGATCCTCATACAAAAGAATCTCGTGGATTTGGTTTTGTAACTATGGAAACTAATGATGATGCTGAGTGCTGTATCAAGTATTTGAACCGCTCTGTTTTTGAAGGTCGGCTGATAACTGTGGAAAAGGCAAAGAGAAATCGTGGCAGGACTCCAACTCCTGGCAAATACTGTGGTCCAAGAGATAAGCGGGGACAGGGAGGGAGACGATCTCATAGTTACTCACCTAAGCGATGGCAGGATAGAGGTTACCATTCAAGGGACCGGCGAGGACGATCTCGTTCTCCATATCATAGGAGGGTGGAAGATTACTCTGACACACATAGGAGGCAGAGGGATTAG 576 0.4531 MSSAKTPRSASPSPVRSRRSRSKSLSRSRRSRSRSQDSADVENPGNNLYVTGLSTRITDSDLHKYFSKEGKVVDCHLVKDPHTKESRGFGFVTMETNDDAECCIKYLNRSVFEGRLITVEKAKRNRGRTPTPGKYCGPRDKRGQGGRRSHSYSPKRWQDRGYHSRDRRGRSRSPYHRRVEDYSDTHRRQRD* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2374 191 MobiDBLite consensus disorder prediction 1 19 - -
Gso10g2374 191 MobiDBLite consensus disorder prediction 1 51 - -
Gso10g2374 191 PANTHER OS08G0385900 PROTEIN 4 185 - -
Gso10g2374 191 MobiDBLite consensus disorder prediction 122 191 - -
Gso10g2374 191 CDD RRM_RBMX_like 45 124 - -
Gso10g2374 191 SUPERFAMILY RNA-binding domain, RBD 38 151 IPR035979 GO:0003676
Gso10g2374 191 MobiDBLite consensus disorder prediction 140 191 - -
Gso10g2374 191 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 117 IPR000504 GO:0003723
Gso10g2374 191 Gene3D - 2 130 IPR012677 -
Gso10g2374 191 SMART rrm1_1 47 120 IPR000504 GO:0003723
Gso10g2374 191 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 124 IPR000504 GO:0003723
Gso10g2374 191 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 4 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2374 Gso-Chr10 50632885 50636633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2374 16 128 Eukaryotic Initiation Factors Gene Family AT2G23350 28.319 8.45e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2374 K12897 - gmx:100798472 324.324