Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2352 ATGTTAGGTTCATTACCAATATTGCCACTCCCTGCTCCTCCCTCTGATGGAAATCTAGGTCCTCTCCCTGAGTCTCAAGTGATTGATAATGAGGAGCAGAACAAATCAAATTCTGTTTCTGTTCCAGCGCCGGCAACAGTTGCCACCCACACCAGAACGATTGGAATTATACATCCGCCTCCGGACATTAGGACCATTGTTGATAAAACCTCCCAGTTCGTCGCCAAGAATGGTCCAGAATTTGAAAAGAGGATCATTGCAAATAACACAGGAAATGTCAAGTTCAATTTCTTGAACTCATCAGATCCCTATCACGCTTATTATCAACACCGGTTGTCCGAATTTCGCGCTCAGAATCAGTCTTCAGGGCTGCAACCTCCTTCCCAGCCTGCAGACTCGGCTGTCCCTGAATCAGCCCCGTCTGATAGCAACGGCGTAGCAGCAGCAGCAGAAAAGATCGACGTTTCTGCCCAGTTTAAAGCTGTAAGGAAAGTGCTTGAACCCCCTGAAGCTGAACAGTATACAGTTCGGCTTCCTGAAGGAATTACAGGGGAAGAGCTGGATATTATAAAGCTTACAGCACAATTCGTGGCTCGAAATGGGAAATCTTTTTTGACAGGGTTGACTAGTAGGGAAGTTAATAATCCCCAGTTCCATTTTCTTAAACCGACCCACAGCATGTTTACGTTTTTTACTTCCCTCGCGGATGCATATTCTAAGGTTTTGATGCCTCCAAAAGGTTTGCCGGAGAAGCTAAAGAAGAGCGTGTCTGATATGACTACTGTCCTTGAAAGGTGTGTGAATAGGCTGGAGTGGGAGCGTTCGCAAGAGCAAGCTAGGCAAAAGGCTGAGGATGAGATAGAACAGGAAAGAATACAAATGGCTATGATTGATTGGCATGATTTTGCGGTGGTTGAAACAATAGATTTTGCTGATGATGAGGATGAAGAGTTACCTCCTCCAATGACTATTGAGGAGGTTATAAGGAGAAGCAAGGTGACAGCCATGGAAGAAGAAGATATTGTTGAGCCTGGAAAGGAGATTGAAATGGAAATGGATGAGGAAGAGGCCCAGCTTGTCGAGGAGGGTATGAGAGCTGCTAGTTTGGAAGACCGTGATGACGTGAAGCAGAATGAAGTCAGGGTTACTGAAGACCCTGAACCACCGATGAGAATTGTTAAGAACTGGAAGAGACCAGAGGAGAGGATTTCTGCAGAAAGAGATTCAACCAAGTTTGTTGTTTCTCCTATCACTGGCGAGTTAATTCCTATTAGTGAGATGTCAGAACATATGCGGATTTCTCTCATTGATCCCAAGTACAAAGAACAAAAGGAAAGAATGTTTGCCAAAATTCGAGAGACAACTTTGGCTGCGGATGATGAAATTTCAAGAAACATTGTTGGACTTGCTCGGACCCGTCCTGATATATTCGGTACTACAGAAGAAGAGGTCTCCAATGCTGTCAAGGCAGAGATTGAGAAGATAAATGATGAGCAACCAAAGCAGGTTATATGGGATGGTCACACTGGTAGCATTGGACGTACTGCAAACCAAGCCATGTCACAAACTATTGGAAGCGAGGATCAAAATGATGCTTTTAATAATGAAGCCAAGAACCTTCTGGGTCCTGCTGCACCTCCTCCAAGACCTGGTATGCCTTCAATTCGTCCTCTTCCGCCTCCACCTGGACTGGCATTGAATCTTCCCCGTGTTCCCGTCCAATATTCTGTTCCCCATAGTGGTGCCCTTCCAATGCCTCCACCTAGACCCATGATGCCATCTATTCGGCCTGCTCCTCCTCCTCCAATGTCGATGAATAGTGGACAGCAGTCAGTTATGGCGGGCCAACCTCACCCAATGCATCCATCAATTCATATGAATAACCAAGGAATTCCCATACCCCCACCACCGGGATCTCAGTTCACTCCTGTTCCAGTTCCGCGACCTTTTGTTCCTCTTTCTGTTCCACCATCAGTTATGCCTATGATGCACCCACCACCTTTGCCTCAAGGAGTGCCACCGCCACCGCCACCAGAGGAGGCTCCTCCTCCACTCCCAGAAGAACCAGAACCAAAGAGGCAGAAACTTGATGATTCTGCTCTGATACCTGAAGATCAATTTCTGGCTCAACATCCTGGGCCTGTTTGCATTTGTGTATCTGTTCCTAATGTTGATGAAGGAAATCTTAAGGGACAAGTTCTGGAAATTACAGTGCAATCTTTGTCTGAAACTGTTGGTAGTCTGAAGGAAAAAATTGCTGGGGAGATCCAGCTCCCTGCTAATAAGCAGAAATTGAGTGGAAAGCCTGGCTTTCTCAAGGATAATATGTCACTTGCCCATTACAATGTTGGTGGAGGTGAAACACTTACCCTCACGTTAAGAGAGCGTGGTGGTAGAAAGAGATGA 2406 0.4601 MLGSLPILPLPAPPSDGNLGPLPESQVIDNEEQNKSNSVSVPAPATVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGPEFEKRIIANNTGNVKFNFLNSSDPYHAYYQHRLSEFRAQNQSSGLQPPSQPADSAVPESAPSDSNGVAAAAEKIDVSAQFKAVRKVLEPPEAEQYTVRLPEGITGEELDIIKLTAQFVARNGKSFLTGLTSREVNNPQFHFLKPTHSMFTFFTSLADAYSKVLMPPKGLPEKLKKSVSDMTTVLERCVNRLEWERSQEQARQKAEDEIEQERIQMAMIDWHDFAVVETIDFADDEDEELPPPMTIEEVIRRSKVTAMEEEDIVEPGKEIEMEMDEEEAQLVEEGMRAASLEDRDDVKQNEVRVTEDPEPPMRIVKNWKRPEERISAERDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAADDEISRNIVGLARTRPDIFGTTEEEVSNAVKAEIEKINDEQPKQVIWDGHTGSIGRTANQAMSQTIGSEDQNDAFNNEAKNLLGPAAPPPRPGMPSIRPLPPPPGLALNLPRVPVQYSVPHSGALPMPPPRPMMPSIRPAPPPPMSMNSGQQSVMAGQPHPMHPSIHMNNQGIPIPPPPGSQFTPVPVPRPFVPLSVPPSVMPMMHPPPLPQGVPPPPPPEEAPPPLPEEPEPKRQKLDDSALIPEDQFLAQHPGPVCICVSVPNVDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNVGGGETLTLTLRERGGRKR* 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2352 801 ProSiteProfiles SURP motif repeat profile. 66 108 IPR000061 GO:0003723|GO:0006396
Gso10g2352 801 Gene3D Surp module 50 123 IPR035967 GO:0003723|GO:0006396
Gso10g2352 801 MobiDBLite consensus disorder prediction 117 146 - -
Gso10g2352 801 Pfam Surp module 64 115 IPR000061 GO:0003723|GO:0006396
Gso10g2352 801 Pfam Surp module 187 238 IPR000061 GO:0003723|GO:0006396
Gso10g2352 801 ProSiteProfiles SURP motif repeat profile. 189 231 IPR000061 GO:0003723|GO:0006396
Gso10g2352 801 SUPERFAMILY Surp module (SWAP domain) 166 239 IPR035967 GO:0003723|GO:0006396
Gso10g2352 801 Gene3D - 690 800 - -
Gso10g2352 801 MobiDBLite consensus disorder prediction 117 140 - -
Gso10g2352 801 Coils Coil 273 293 - -
Gso10g2352 801 Gene3D Surp module 182 240 IPR035967 GO:0003723|GO:0006396
Gso10g2352 801 MobiDBLite consensus disorder prediction 662 695 - -
Gso10g2352 801 CDD Ubl_SF3a120 714 794 IPR035563 -
Gso10g2352 801 SUPERFAMILY Ubiquitin-like 694 799 IPR029071 -
Gso10g2352 801 MobiDBLite consensus disorder prediction 1 25 - -
Gso10g2352 801 PRINTS Proline rich extensin signature 545 561 - -
Gso10g2352 801 PRINTS Proline rich extensin signature 581 602 - -
Gso10g2352 801 PRINTS Proline rich extensin signature 644 661 - -
Gso10g2352 801 PRINTS Proline rich extensin signature 666 691 - -
Gso10g2352 801 SMART surpneu2 64 117 IPR000061 GO:0003723|GO:0006396
Gso10g2352 801 SMART surpneu2 187 240 IPR000061 GO:0003723|GO:0006396
Gso10g2352 801 MobiDBLite consensus disorder prediction 662 684 - -
Gso10g2352 801 SMART ubq_7 722 794 IPR000626 GO:0005515
Gso10g2352 801 ProSiteProfiles Ubiquitin domain profile. 742 798 IPR000626 GO:0005515
Gso10g2352 801 SUPERFAMILY Surp module (SWAP domain) 41 119 IPR035967 GO:0003723|GO:0006396
Gso10g2352 801 Pfam Pre-mRNA splicing factor PRP21 like protein 256 471 IPR022030 -
Gso10g2352 801 PANTHER SPLICING FACTOR 3A, PROTEIN 7 112 - -
Gso10g2352 801 PANTHER SPLICING FACTOR 3A, PROTEIN 154 801 - -
Gso10g2352 801 Coils Coil 352 372 - -
Gso10g2352 801 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 154 801 IPR045146 GO:0003723|GO:0045292
Gso10g2352 801 PANTHER SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED 7 112 IPR045146 GO:0003723|GO:0045292
Gso10g2352 801 Pfam Ubiquitin family 729 796 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2352 Gso-Chr10 50469518 50473282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2352 729 798 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 37.143 7.31e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2352 K12825 - gmx:100786120 1372.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1004 20 39806865 39811162 Gso10g2352 10 50469518 50473282 GST