Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2346 ATGGATTCAGTGCCTGCTGATGTGTCTAATTCACATACTATTAATGACCCGTCGAAGTCACCTCCGGCTAAAGAGACTGACAGACAAGCTTCTGCTTCTGTAGCCTCCGGGCAAGATAATTCTCCACATGAGGCATCACCTAGGCTATCTCCCACGGGCATATCATCCTGGGCCAAAAACTTGAAAATTTCTCAGCCATTTTCTGGCTCCCAAGACGACTCATCAAGTGGAAATGTTGGGAAATCAACTTTTGCACGCATCACAAGTAATTTCGGATTGAGGTTGTCTCCAAAGTCTCCTGTAGAAGATGACAGTTCCAGTGAAACAGCTGGACAATCTAATTTGTTTGGAACTATTACGAAAGGCCTGGTCGACTCTTCTAAGAATGCAGTGAAAGCTGTGCAGGTTAAGGCACGGCATGTTGTTTCACAGAATAAACGCAGATACCAGGAAGGAGGTTTTGATTTAGATATGACATATATCACTGAAAACATTATTGCAATGGGATTCCCTGCTGGCGACATGAGCTCTGGGTTTTTCGGCTATGTTGAAGGATTTTACAGAAATCACATGGAAGAAGTGATTAAGTTTTTTGAAACTCACCATAAGGATAAATACAAAGTTTATAATCTTTGTTCTGAGCGGTTGTATGATGCATCATTGTTTGAGGGGAAGGTGGCTAGCTTCCCATTTGATGACCACAATTGCCCACCAATTCAACTGATTATATCATTCTGTCAAAGTGCTTACTCATGGTTGAAAGAAGACATTGAGAATGTTGTGGTTGTCCACTGTAAGGCTGGAATGGCAAGGACTGGGTTGATGATTTCTAGTCTTCTAGTGTTCTTAAAGTTCTTCCCAACTGCTGAGGAATCAATGGATTACTATAATCAGAAAAGATGTGTTGATGGAAAGGGACTTGTTCTGCCTAGTCAGATTAGGTATGTCAAATATTTTGAACGAGTCTTGACTTACTTTAATGGTGAAAACCCACCTGCCCGCAGGTGCATGCTTAGGGGATTCCGGCTTCACAGATGCCCTTACTGGATTAGGCCCTCTATAACCGTCTCAGATCACAGTGGTGTGTTGTTCTCAACCAAAAAGCATCCGAGAACCAAGGATCTTTTGCCAGAAGATTTTTGGTTTGGTGCACCAAAGAAGGGAGTGATGGTCTTTGCCTTGCCAGGAGAGCCTGGTCTTACAGAGTTGGCTGGGGACTTCAAAATCCATTTTCATGACCGCCAAGGAGATTTTTACTGTTGGTTAAACACAACTATGACAGAAAATAGGAAAGTATTGAACACTGGTGATCTGGATGGCTTTGACAAGAGAAAATTGCCTTCGCCGGGATTTATGGTTGAGGTTGTGCTCGTGGACTATAATGGCAATGTTGTAACTTCTAAAATTGAAACTACTACAAAAAAATCAGATGAGAGTTCAAGTAACAATCCTGCCAGTCCCACCCCAGTGGAAAGGAGCACCCCTGCACAGAATGCAGACAAAGAATCAGATAGTCATGATAAAGATGATGTGTTTTCAGATGGTGAGGCAGAGCAATCTGCTTCTTCAAGAAGCAAGCAAACAAAAGCACCTTCTCAAGCAGTTGAAAAAGTTAAAAATGACACCAGAGTCTCCGAATCAAGCAGAGTTTCAAATGAAATTGCAAATTTATCACATGCAACAGAACAAGTTTCCTTGGGAAACAAGAGCTCTACGCCAATTCGTCATGCTAGTGAGCCAAGAACTAACGTTGAAGGAAAAACAGTGTCCAGTCTCGAGGTGCCCAGCACAGAAAGTGAGTTTAAGGCCATGGCTGCAGATGCTTCTGTTTTTACCTTTGGAGATGATGAAGACTACGAAAGTGATTGA 1869 0.4243 MDSVPADVSNSHTINDPSKSPPAKETDRQASASVASGQDNSPHEASPRLSPTGISSWAKNLKISQPFSGSQDDSSSGNVGKSTFARITSNFGLRLSPKSPVEDDSSSETAGQSNLFGTITKGLVDSSKNAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPIQLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLVFLKFFPTAEESMDYYNQKRCVDGKGLVLPSQIRYVKYFERVLTYFNGENPPARRCMLRGFRLHRCPYWIRPSITVSDHSGVLFSTKKHPRTKDLLPEDFWFGAPKKGVMVFALPGEPGLTELAGDFKIHFHDRQGDFYCWLNTTMTENRKVLNTGDLDGFDKRKLPSPGFMVEVVLVDYNGNVVTSKIETTTKKSDESSSNNPASPTPVERSTPAQNADKESDSHDKDDVFSDGEAEQSASSRSKQTKAPSQAVEKVKNDTRVSESSRVSNEIANLSHATEQVSLGNKSSTPIRHASEPRTNVEGKTVSSLEVPSTESEFKAMAADASVFTFGDDEDYESD* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2346 622 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 240 300 IPR000387 GO:0016311|GO:0016791
Gso10g2346 622 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 160 328 IPR029021 -
Gso10g2346 622 MobiDBLite consensus disorder prediction 1 57 - -
Gso10g2346 622 MobiDBLite consensus disorder prediction 497 515 - -
Gso10g2346 622 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 17 622 - -
Gso10g2346 622 ProSiteProfiles C2 tensin-type domain profile. 333 460 IPR014020 -
Gso10g2346 622 MobiDBLite consensus disorder prediction 471 589 - -
Gso10g2346 622 MobiDBLite consensus disorder prediction 547 589 - -
Gso10g2346 622 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 17 622 - -
Gso10g2346 622 MobiDBLite consensus disorder prediction 471 496 - -
Gso10g2346 622 SMART PTEN_C2_2 331 459 IPR014020 -
Gso10g2346 622 ProSitePatterns Tyrosine specific protein phosphatases active site. 263 273 IPR016130 GO:0016311|GO:0016791
Gso10g2346 622 ProSiteProfiles Phosphatase tensin-type domain profile. 147 326 IPR029023 -
Gso10g2346 622 Gene3D Protein tyrosine phosphatase superfamily 132 329 IPR029021 -
Gso10g2346 622 MobiDBLite consensus disorder prediction 516 535 - -
Gso10g2346 622 CDD PTP_PTEN 157 321 IPR045101 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2346 Gso-Chr10 50395110 50403511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2346 36 622 Protein tyrosine phosphatase (PTP) family AT3G19420 68.657 0.0 852
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2346 K01110 - gmx:100784003 1249.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1010 20 39869707 39875913 Gso10g2346 10 50395110 50403511 GST
Gso1g1629 1 52965600 52973292 Gso10g2346 10 50395110 50403511 PCT
Gso11g0453 11 4000692 4008568 Gso10g2346 10 50395110 50403511 PCT