Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2345 ATGGCAATTCAGCACCACAATGACCAACTAGAGCATAATGAAAATGTCTCATCTGTCCTTGATGCCCTTTACTGTGACGAAGGAAAGTGGGAAGAGGAAGAGGAGGAGAAAGAAGAAGAAGAAGATGAAGGTGAAAATGAAAGTGAAGTGACAACAAACACTGCAACTTGTCTTTTCCCTCTGCTCTTGTTGGAGCAAGACTTGTTCTGGGAAGATGAGGAACTAAACTCTATCTTTTCCAAAGAGAAGGTTCAACATGAAGAAGCCTATGGCTATAACAATCTGAACAGTGATGATGATAATAACAACAACAATAATAGTAATAATAATGTGCATTTGGACTCTTGTCTCTCTCAGCCTCGTCGTGAGGCAGTGGAATGGATGCTGAAAGTCAATGCTCACTATGGATTCTCTGCTCTCACTGCAACACTGGCCGTTACTTATCTGGATAGGTTCCTTCTAAGCTTCCATTTTCAAAGAGAGAAGCCATGGATGATCCAGCTTGTGGCTGTCACTTGCATCTCTTTGGCTGCAAAAGTTGAAGAAACTCAAGTGCCTCTTCTCTTGGACCTTCAAGTGCAAGACACAAAGTATTTGTTTGAGGCAAAGACTATTCAGAGAATGGAGCTTCTGGTGCTGTCCACACTCAAATGGAAGATGCACCCCGTGACACCACTCTCGTTTCTAGATCACATTATAAGAAGGCTTGGATTGAGAACTCATCTTCACTGGGAGTTTCTCAGGCGCTGTGAGCATCTTCTTCTGTCTGTGCTTTTAGATTCAAGATTTGTTGGTTGTCTTCCTTCTGTGTTGGCCACTGCAACAATGCTGCATGTTATAGACCAGATTCAACACAGTGGTGGGATAGAATACAAAACTCAGCTTCTAAGTGTTCTCAAAATTAGCAAGGAGAAAGTAGATGAGTGTTATAATGCAATTCTCCAACTCTCAAAGGCCAATAAATATGGTCATAACAACATCAACAACACTAGCAAGCGCAAGTATGAGCAAATCCCAAGCAGCCCAAGTGGCGTAATTGATGCTGCATTTTGCTCTGATGGTTCCAACGATTCGTGGGCAGTGGGGTCATCATTGTTATATTCACCACCAGAGCCTCTCTTCAAGAAGAGCAGAACCCAAGGACAACAAATGAATTTGTCACCACTTAAACGGTTCATTATCGGAATTGTTGGCACCTCTCCTTAA 1206 0.4245 MAIQHHNDQLEHNENVSSVLDALYCDEGKWEEEEEEKEEEEDEGENESEVTTNTATCLFPLLLLEQDLFWEDEELNSIFSKEKVQHEEAYGYNNLNSDDDNNNNNNSNNNVHLDSCLSQPRREAVEWMLKVNAHYGFSALTATLAVTYLDRFLLSFHFQREKPWMIQLVAVTCISLAAKVEETQVPLLLDLQVQDTKYLFEAKTIQRMELLVLSTLKWKMHPVTPLSFLDHIIRRLGLRTHLHWEFLRRCEHLLLSVLLDSRFVGCLPSVLATATMLHVIDQIQHSGGIEYKTQLLSVLKISKEKVDECYNAILQLSKANKYGHNNINNTSKRKYEQIPSSPSGVIDAAFCSDGSNDSWAVGSSLLYSPPEPLFKKSRTQGQQMNLSPLKRFIIGIVGTSP* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2345 401 MobiDBLite consensus disorder prediction 29 48 - -
Gso10g2345 401 CDD CYCLIN 121 213 IPR013763 -
Gso10g2345 401 Gene3D - 222 313 - -
Gso10g2345 401 PANTHER CYCLIN-D3-1 40 357 - -
Gso10g2345 401 SUPERFAMILY Cyclin-like 114 221 IPR036915 -
Gso10g2345 401 MobiDBLite consensus disorder prediction 29 51 - -
Gso10g2345 401 ProSitePatterns Cyclins signature. 121 152 IPR006671 -
Gso10g2345 401 Pfam Cyclin, C-terminal domain 223 336 IPR004367 -
Gso10g2345 401 SUPERFAMILY Cyclin-like 224 334 IPR036915 -
Gso10g2345 401 Coils Coil 27 47 - -
Gso10g2345 401 PANTHER CYCLINS 40 357 IPR039361 -
Gso10g2345 401 SMART cyclin_7 126 214 IPR013763 -
Gso10g2345 401 SMART Cyclin_C_2 223 354 IPR004367 -
Gso10g2345 401 Gene3D - 114 221 - -
Gso10g2345 401 MobiDBLite consensus disorder prediction 92 112 - -
Gso10g2345 401 Pfam Cyclin, N-terminal domain 118 220 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2345 Gso-Chr10 50384749 50387037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2345 1 334 Core Cell Cycle Gene Families AT4G34160 52.695 3.87e-114 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2345 K14505 - gmx:100782569 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1011 20 39883370 39886042 Gso10g2345 10 50384749 50387037 GST
Gso1g1631 1 52979225 52981407 Gso10g2345 10 50384749 50387037 PCT
Gso11g0451 11 3991134 3993275 Gso10g2345 10 50384749 50387037 PCT