Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2338 ATGGACATGAACGAAATCGATGTTCCTTCGTTCTTTCTCTGCCCCATTTCGCTAGAAATCATGAAGGATCCAGTGACGGTCTCAACGGGCATCACCTACGACCGTGAAAGCATCGAAACGTGGCTGTTCTCGAAGAAAAACACGACATGCCCCATTACCAAACAGCCCTTGATTGATTACACCAATCTCACACCAAATCACACCCTTCGGAGACTCATCCAATCGTGGTGTACCATGAACGCTTCTCACGGCATCGAAAGGATCCCAACCCCTAAACCCCCCGTTAACAAGAACCAAATTTCGAAGCTTCTCAAAGACGCTTCTCATTCCCCTCTCACATGCCTCAGAAGACTCAAATCCATCGCTTCAGGAAGCGAAACAAATAAGCGGTGCATGGAAGCTTCTGGCGCTGTTGAGTTTCTAGCATCAATTGTAATCAACAACAACAGCAACATTGATTCTTCAAATGAGGCTGACTCAAACGACGGATCTGGATTCGAGTTGAAAACAAGTGCAAGCGATGAAGCGTTGAGTTTGCTTCATAATCTTCATTTATCTGAACAAGGGTTGAAGACTCTCTTAAGCTTCAGAAACGGCGAGTTTATTGAGTCTTTAACAAGAGTCATGCAAAAGGGGTTCTTTGAATCACGCGCTTATGCTGTGTTCTTGTTGAAATCTACTTCCGAAGTGGCTGAACCAGTGCAACTATTGCATCTAAGACAAGAACTTTTTGTCGAACTGGTACAAGTCCTGAAGGATCAAATTTCACAGAAGACATCAAAAGCGACCCTTCAAACCCTGATCCAATTCTCTCCTTGGGGGAGGAACAGGATCAAAGCTGTGGAAGCAGGTACTGTTCCTGTTTTGGTTGAGCTTCTTCTCGATTGCAAGGAGAGAAAGCCTTGTGAGATGATGCTGGTGTTGTTGGAACTGCTATGCCAGTGTGCTGAGGGAAGAGCAGAACTTTTGAGCCATGCAGCAGGTCTTGCCATTGTGTCCAAAAAGATTCTAAGGGTTTCAACTTTGGCGAATGATAGAGCTGTTAAGATTATTCTGTCTCTTTCGAGGTTCTCTGCGACTCCACATGTTGTTCAAGAAATGCTGAAACTCGGTGTGGTCGCGAAATTGTGCTTGGTGCTTCAGGTGGATAGTGGAAACAAGGCTAAGGAAAAAGCTAGAGAGATACTCAAATTGCATGCTCGGGCGTGGAGGAATTCTCCATGCATACCGAACAATTTGCTTAATTCATACACGAATTATGTGTGA 1266 0.4479 MDMNEIDVPSFFLCPISLEIMKDPVTVSTGITYDRESIETWLFSKKNTTCPITKQPLIDYTNLTPNHTLRRLIQSWCTMNASHGIERIPTPKPPVNKNQISKLLKDASHSPLTCLRRLKSIASGSETNKRCMEASGAVEFLASIVINNNSNIDSSNEADSNDGSGFELKTSASDEALSLLHNLHLSEQGLKTLLSFRNGEFIESLTRVMQKGFFESRAYAVFLLKSTSEVAEPVQLLHLRQELFVELVQVLKDQISQKTSKATLQTLIQFSPWGRNRIKAVEAGTVPVLVELLLDCKERKPCEMMLVLLELLCQCAEGRAELLSHAAGLAIVSKKILRVSTLANDRAVKIILSLSRFSATPHVVQEMLKLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWRNSPCIPNNLLNSYTNYV* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2338 421 PANTHER WDSAM1 PROTEIN 3 418 IPR045185 GO:0061630
Gso10g2338 421 SUPERFAMILY RING/U-box 4 84 - -
Gso10g2338 421 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Gso10g2338 421 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Gso10g2338 421 Pfam U-box domain 8 80 IPR003613 GO:0004842|GO:0016567
Gso10g2338 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Gso10g2338 421 Gene3D - 100 407 IPR011989 -
Gso10g2338 421 CDD RING-Ubox_PUB 12 55 IPR045210 -
Gso10g2338 421 SUPERFAMILY ARM repeat 113 392 IPR016024 -
Gso10g2338 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2338 Gso-Chr10 50330925 50332527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2338 1 417 U-box Gene Family AT3G52450 56.948 6.85e-174 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2338 - - gmx:100811258 796.964