Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2316 ATGGCTAGTCCAACTGGAGAATTGACAAGCCATAACGACGGTACCACCGACCGGATGGGAACTGAACAATGTGAATTGTCAGAAAAAACGCCTCAGATAGGCTCTGAAGGTTTAGAGAATGAACAAAAGGAGCTTGGTACTGAGTTAACCAGTTCGGTTATTGAAGAAAAATCAAATCAAGTTTCTGCCATTGTAACAGAGAATGCCGTTATTCAACTGCCTGAACCGCTTCAACATGACTTACAAAAGAATTGCCAGACTGTAGAAGGTTCATGCCTTGAACAAAGTACTGTCGAAAAAGTCACTGTTGATTTATCTAATGATAAACCTGAAAACAAATGCAAACCATTGTCTGAAAATGTTCAAAGTGAACCCGTAGAATCCATTCCTGCCGTTGTTGTTGAAGGCCAAATGCAATCCAATCCATCTCAAGCGAATATGAGTTCTGTGAATGAATTATTGGATCAACCTTCTGGAGATGCTGTGAACAATATTAGTTCCAATTGTTCAGAAAAAATGTCTAATAGCCCAACTCATTCACAGTCTAGGCGCAAGGGTAAAAAGAACTCTAAATTATTGAAAAAGTATATGCTAAGGTCGTTAGGAAGCAGTGACAGAGCTTTGCGGTCAAGAACAAAAGAAAAACCCAAGGAACCTGAACCAACTAGTAATTTGGTTGATGGTAACAATAATGGAGTTAAGAGGAAAAGTGGGAGGAAGAAGAAAAAGAGAAAAGAGGAGGGAATTACTGATCAGTTTTCTAGAATCAGATCTCACTTAAGATATTTATTAAACCGAATAAGCTATGAAAACAGCTTGATTGATGCTTATTCTGGCGAGGGCTGGAAAGGATACAGTATCGAAAAGTTAAAGCCTGAGAAGGAGCTTCAGCGGGCTAAGTCGGAAATTCTTCGACGCAAATTGAAAATTAGGGATCTATTTCAAAATTTGGATTCATTGTGTGCCGAAGGAAAGTTTCCAGAATCTTTGTTTGATTCTGCAGGAGAGATTGACAGTGAGGATATATTTTGTGCAAAATGCCAGTCCAAAGAGTTGAGCACTAATAATGATATAATTCTTTGTGATGGTGTTTGTGACCGTGGATTTCACCAGCTCTGTTTGGATCCTCCGATGTTAACTGAAGACATTCCACCTGGCGATGAGGGTTGGTTATGCCCAGGATGTGATTGCAAAGATGACTGCATGGACCTTGTTAACGACTCCTTCGGAACAAGTCTCTCTATTAGTGACACCTGGGAGAGAGTCTTTCCTGAAGCAGCATCATTTGCTGGAAATAATATGGATAACAACTCGGGAGTTCCTTCTGATGATTCTGATGATGATGATTATAATCCTAATGGTCCAGATGATGTGAAAGTTGAAGGGGATGAGTCAAGTTCTGATGAATCTGAGTATGCTTCTGCTTCTGAGAAATTGGAGGGTGGTTCACACGAGGATCAATACTTGGGCCTTCCATCTGAAGATTCTGATGATGGTGATTATGATCCTGATGCTCCAGATGTTGAATGTAAAGTCAATGAAAAAAGTTCAAGCTCTGATTTCACTTCTGACTCCGAGGATCTTGCTGCTGCAATTGAGGATAACACATCCCCTGGACAGGATGGAGGCATCAGTTCCAGCAAAAAAAAGGGTAAAGTTGGTAAGAAGCTATCTCTGCCCGATGAACTGTCATCTTTACTAGAGCCAGATTCTGGCCAAGAGGCTCCCACTCCTGTTTCTGGGAAAAGACATGTGGAAAGGTTGGACTACAAAAAGCTGTATGAGGAGACGTATCACAGTGATACGAGTGATGATGAAGATTGGAATGACACTGCTGCTCCAAGTGGAAAAAAGAAACTCACTGGCAATGTAACTCCAGTGTCACCAAATGGAAATGCTTCAAATAATTCTATACATACTCCTAAGAGGAATGCTCATCAGAATAATGTTGAAAATACAAATAATTCACCCACTAAATCACTTGAGGGCTGTTCGAAATCTGGTTCCAGGGATAAAAAGTCTGGATCTTCAGCACACAAAAGACTAGGAGAAGCCGTAGTTCAGAGACTTCACAAATCTTTTAAAGAAAATCAGTATCCAGATAGAACCACAAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTATCAGCAGGTTGCCAAATGGTTTGGCAATACACGTTGGAGCTTCCGGCATTCATCACAAATGGAAACCAATTCAGGTAGAAATGCTTCACAGCAAGTTACTGATGGCAGAGCTGAAAATGAGGGGGAGAAGGAATGTGAATTAATATCTCCGGAGTTCAGTGGAGAAAAATCAAAAACCCCAAACTCTAGAAAAAGGAAGCATTTGTCAGAACCCCTATCTGAAGCACAGCTGGATATCAATGGCTCAGCAGCAAGTTCACCAAATGTTCATCTAACGCAAATAGGCAATAAAATGAAGACAAGGAAAAGGAAATGA 2463 0.4056 MASPTGELTSHNDGTTDRMGTEQCELSEKTPQIGSEGLENEQKELGTELTSSVIEEKSNQVSAIVTENAVIQLPEPLQHDLQKNCQTVEGSCLEQSTVEKVTVDLSNDKPENKCKPLSENVQSEPVESIPAVVVEGQMQSNPSQANMSSVNELLDQPSGDAVNNISSNCSEKMSNSPTHSQSRRKGKKNSKLLKKYMLRSLGSSDRALRSRTKEKPKEPEPTSNLVDGNNNGVKRKSGRKKKKRKEEGITDQFSRIRSHLRYLLNRISYENSLIDAYSGEGWKGYSIEKLKPEKELQRAKSEILRRKLKIRDLFQNLDSLCAEGKFPESLFDSAGEIDSEDIFCAKCQSKELSTNNDIILCDGVCDRGFHQLCLDPPMLTEDIPPGDEGWLCPGCDCKDDCMDLVNDSFGTSLSISDTWERVFPEAASFAGNNMDNNSGVPSDDSDDDDYNPNGPDDVKVEGDESSSDESEYASASEKLEGGSHEDQYLGLPSEDSDDGDYDPDAPDVECKVNEKSSSSDFTSDSEDLAAAIEDNTSPGQDGGISSSKKKGKVGKKLSLPDELSSLLEPDSGQEAPTPVSGKRHVERLDYKKLYEETYHSDTSDDEDWNDTAAPSGKKKLTGNVTPVSPNGNASNNSIHTPKRNAHQNNVENTNNSPTKSLEGCSKSGSRDKKSGSSAHKRLGEAVVQRLHKSFKENQYPDRTTKESLAQELGLTYQQVAKWFGNTRWSFRHSSQMETNSGRNASQQVTDGRAENEGEKECELISPEFSGEKSKTPNSRKRKHLSEPLSEAQLDINGSAASSPNVHLTQIGNKMKTRKRK* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2316 820 SUPERFAMILY Homeodomain-like 676 736 IPR009057 -
Gso10g2316 820 Pfam Homeodomain 685 729 IPR001356 GO:0003677
Gso10g2316 820 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 127 783 - -
Gso10g2316 820 SMART HOX_1 675 737 IPR001356 GO:0003677
Gso10g2316 820 MobiDBLite consensus disorder prediction 1 37 - -
Gso10g2316 820 MobiDBLite consensus disorder prediction 1 48 - -
Gso10g2316 820 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 400 IPR013083 -
Gso10g2316 820 MobiDBLite consensus disorder prediction 580 613 - -
Gso10g2316 820 MobiDBLite consensus disorder prediction 752 767 - -
Gso10g2316 820 CDD homeodomain 687 734 IPR001356 GO:0003677
Gso10g2316 820 MobiDBLite consensus disorder prediction 429 704 - -
Gso10g2316 820 ProSiteProfiles 'Homeobox' domain profile. 673 733 IPR001356 GO:0003677
Gso10g2316 820 MobiDBLite consensus disorder prediction 791 811 - -
Gso10g2316 820 ProSiteProfiles Zinc finger PHD-type profile. 341 398 IPR019787 -
Gso10g2316 820 ProSitePatterns Zinc finger PHD-type signature. 344 395 IPR019786 -
Gso10g2316 820 MobiDBLite consensus disorder prediction 665 702 - -
Gso10g2316 820 PANTHER HOMEOBOX PROTEIN HAT3.1 127 783 - -
Gso10g2316 820 MobiDBLite consensus disorder prediction 616 664 - -
Gso10g2316 820 SMART PHD_3 343 396 IPR001965 -
Gso10g2316 820 SUPERFAMILY FYVE/PHD zinc finger 333 401 IPR011011 -
Gso10g2316 820 Pfam PHD-finger 343 398 IPR019787 -
Gso10g2316 820 MobiDBLite consensus disorder prediction 733 820 - -
Gso10g2316 820 MobiDBLite consensus disorder prediction 107 126 - -
Gso10g2316 820 MobiDBLite consensus disorder prediction 733 751 - -
Gso10g2316 820 CDD PHD_PRHA_like 343 395 IPR045876 -
Gso10g2316 820 Gene3D - 675 746 - -
Gso10g2316 820 MobiDBLite consensus disorder prediction 206 221 - -
Gso10g2316 820 MobiDBLite consensus disorder prediction 137 180 - -
Gso10g2316 820 MobiDBLite consensus disorder prediction 137 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2316 Gso-Chr10 50167150 50175064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2316 238 730 Homeobox Transcription Factor Family AT3G19510 49.153 2.18e-131 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Gso10g2316 PHD 2.1e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2316 - - gmx:100306715 1542.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1039 20 40161040 40169044 Gso10g2316 10 50167150 50175064 GST