Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2308 ATGCTGCGTTTGTGCTACGGCCCTCTGGATTGCTGCTTCCGACGCCGCCGTGCCGACGGACTCCTCTGGCACACCGACTTGAAGCCCCACGCCTCCGGCGACTTCTCCATCGCCGTCGCCCAGGCCAATTACTGTCTCGAGGATCAGAGCCAAGTCTTCACCTCCCCCTACGCCACCTACGTCGGCGTCTACGACGGCCACGGCGGCCCCGAAGCTTCTCGATTCGTCAACAAGCGCCTCTTCCCTTATTTGCACAAATTCGCCACTGAGCAAGGAGGGTTGTCTGTGGATGTGATAAAAAAGGCATTCAGTGCCACAGAGGAGGAATTCTTGCATTTGGTGAAGCTATCCTTGCCCATTAGTCCCCAGATTGCTTCCGTCGGATCCTGTTGCCTTTTTGGTGCAATTTCTAATAATGTGTTGTATGTTGCCAACCTCGGCGACTCGAGAGCTGTTCTTGGCAGGAGGGATACGGTGAGAAAGAACAGTCCAGTGGTGGCACAGCGTTTGTCAACAGATCATAATGTAGCTGATGAAGAGGTGAGAAAAGAAGTTGAAGCTCTCCATCCTGATGACTCGCACATTGTGGTTTATAACCGTGGAGTTTGGAGGATTAAGGGCATTATACAGGTGTCAAGATCTATCGGTGACGTGTATTTGAAGAAACCTGATTTCTACCGAGACCCGGTTTTTCAGCAGTTTGGAAATCCTATTCCTTTGAAGCGTCCTGTAATGACAGCTGAACCATCAATCATTATTAGGGAGCTTGAGTCTCAGGATTTATTCTTGATATTTGCATCAGATGGCCTCTGGGAACAATTAAGTGACGAGGCAGCAGTTCAGATCGTTTTCAAACATCCAAGAGCTGGAATTGCCAAGAGACTGGTGAGAGCTGCTCTTCATGAAGCTGCAAAGAAGAGAGAGATGAGATACGATGACATAAAGAAAATTGACAAAGGAATAAGACGACACTTCCATGATGATATCACTGTAGTTGTAATCTATCTTGATCACCATGCAGGCTCCTCTAATGGTAGATTTAAGCAAACTGGTGTTGACTATACAACTGCCCCTGTTGATATTTTTTCCCTTAATGCGGATGAAGCAGAAAAGCGTATGCTTGGTACAGTTGCCTAA 1137 0.4785 MLRLCYGPLDCCFRRRRADGLLWHTDLKPHASGDFSIAVAQANYCLEDQSQVFTSPYATYVGVYDGHGGPEASRFVNKRLFPYLHKFATEQGGLSVDVIKKAFSATEEEFLHLVKLSLPISPQIASVGSCCLFGAISNNVLYVANLGDSRAVLGRRDTVRKNSPVVAQRLSTDHNVADEEVRKEVEALHPDDSHIVVYNRGVWRIKGIIQVSRSIGDVYLKKPDFYRDPVFQQFGNPIPLKRPVMTAEPSIIIRELESQDLFLIFASDGLWEQLSDEAAVQIVFKHPRAGIAKRLVRAALHEAAKKREMRYDDIKKIDKGIRRHFHDDITVVVIYLDHHAGSSNGRFKQTGVDYTTAPVDIFSLNADEAEKRMLGTVA* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2308 378 ProSitePatterns PPM-type phosphatase domain signature. 60 68 IPR000222 GO:0043169
Gso10g2308 378 PANTHER ALPHABET, ISOFORM E-RELATED 4 373 - -
Gso10g2308 378 Gene3D - 25 345 IPR036457 -
Gso10g2308 378 SUPERFAMILY PP2C-like 44 338 IPR036457 -
Gso10g2308 378 SMART PP2C_4 28 334 IPR001932 -
Gso10g2308 378 CDD PP2Cc 47 336 IPR001932 -
Gso10g2308 378 Pfam Protein phosphatase 2C 59 305 IPR001932 -
Gso10g2308 378 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 4 373 - -
Gso10g2308 378 ProSiteProfiles PPM-type phosphatase domain profile. 34 336 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2308 Gso-Chr10 50110710 50113916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2308 17 343 PP2C-type Phosphatase Gene Family AT3G51370 58.507 1.71e-144 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2308 - K01102 gmx:100812137 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1046 20 40222282 40225191 Gso10g2308 10 50110710 50113916 GST
Gso1g1644 1 53104384 53107870 Gso10g2308 10 50110710 50113916 PCT
Gso11g0436 11 3831519 3835516 Gso10g2308 10 50110710 50113916 PCT