Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2307 ATGACGAGCGCTTCGGAGCTATTCCACACCAGAAGGCATCGATTGGGACGAAATGCTCTCGATCTAGGGCTCGACACCGAACTCCACGCCGCCGATTCTCTCCGCCAACTCCGCCTTCGTCACTACTACCTCCGCCGCCACCACCCGGAGCGTGCATCTGATAGAATTGATGGGAGGTATCGGCGGTCTTTCGTAAGTGAGAGCGTGGATTCTGAAGAAAACGTGAGAAGTAGTCTTAGAGGGAGTAGCAGCGAGAGACTACCCGTAGGTGTGGTTCTTGCACGGGCAAGACTCCTTCAGAGGTTGAGAGGGGAACCTCTATCCACAAACAGGCAATATGATAGAGATTCATTTGGTGAGGATCCAGAAAGTGAATCATCAAACGAAGATCCAAGCGGGGCATCTCTAGTTACTGAGTTGACTTCTCAAATGGCAAGGTCCCAGTTCTTGCAAGAACTAAGCACAAAGCCACCTGGCCTTACTCAAGAGGCCTTGGACTGTTTGCATCAGGAAGTTTTTAGCAGCAATGCCAGTGAGATAGGGTTGGATTCCAGGGTACTGCAGGACTGCAGTATATGTTTGGAGTCTTTCACAGACGGAGATGAGCTGATACGTTTGCCATGTGGACATAAGTTTCACTCTGTTTGCTTGGATCCTTGGATTCGCTGCTGTGGAGACTGTCCATACTGTCGAAGATGTATAGTTGTAAATACTCACTCATCATTAAACGAGGACGAGTAA 741 0.4939 MTSASELFHTRRHRLGRNALDLGLDTELHAADSLRQLRLRHYYLRRHHPERASDRIDGRYRRSFVSESVDSEENVRSSLRGSSSERLPVGVVLARARLLQRLRGEPLSTNRQYDRDSFGEDPESESSNEDPSGASLVTELTSQMARSQFLQELSTKPPGLTQEALDCLHQEVFSSNASEIGLDSRVLQDCSICLESFTDGDELIRLPCGHKFHSVCLDPWIRCCGDCPYCRRCIVVNTHSSLNEDE* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2307 246 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHY1A-RELATED 1 236 - -
Gso10g2307 246 MobiDBLite consensus disorder prediction 109 134 - -
Gso10g2307 246 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Gso10g2307 246 PANTHER SI:CH211-59O9.10 1 236 - -
Gso10g2307 246 CDD RING-H2_PA-TM-RING 189 231 - -
Gso10g2307 246 Pfam Ring finger domain 189 231 IPR001841 -
Gso10g2307 246 SMART ring_2 190 230 IPR001841 -
Gso10g2307 246 SUPERFAMILY RING/U-box 189 237 - -
Gso10g2307 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 235 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2307 Gso-Chr10 50099000 50101389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2307 1 235 C3H Transcription Factor Family AT1G49850 41.923 5.65e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2307 - - gmx:548042 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1047 20 40232431 40235277 Gso10g2307 10 50099000 50101389 GST