Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2296 ATGAGCTGCAATGGTTGTCGAGTCCTCCGAAAGGGTTGCAGTGACGACTGCATGCTACGACATTGCCTACTGTGGATAGAGAACCCACAAGCCCAAGCTCACGCCACCCTCTTCGTCACCAAGTTCTTCGGCCGTGCCACTCTCATGTCTTTCCTTTCCACCGTACCCCCCAACCAAAGATCCGCTTTGTTTGAGTCACTGCTCTATGAAGCAGTGGGGCGTACTATAAATCCAGTGAATGGAGCAGTGGGGCTGTTGTGGACAGGGAACTGGCACCTCTGCCAAATGGGTGTGGAGAAAGTGCTACGAGGTGGTGCTGCTGCTGCGTTGACCCCACTGATCCCTCAAGTAATAACAACGAGTGTGGTGAGAGGTGAAATAATGTGTCACCAGCCAAAGAAGCAATGTGTGGGGACACCCTCTGAGGATGAGGAATCCGAGACCTCCACGTTCGCAAGTAGACCACAGGATTCTGCTCCTCAACCTCAAACCAACCTCCTTACACTATTCTTCTGA 516 0.5233 MSCNGCRVLRKGCSDDCMLRHCLLWIENPQAQAHATLFVTKFFGRATLMSFLSTVPPNQRSALFESLLYEAVGRTINPVNGAVGLLWTGNWHLCQMGVEKVLRGGAAAALTPLIPQVITTSVVRGEIMCHQPKKQCVGTPSEDEESETSTFASRPQDSAPQPQTNLLTLFF* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2296 171 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Gso10g2296 171 MobiDBLite consensus disorder prediction 142 164 - -
Gso10g2296 171 Pfam Lateral organ boundaries (LOB) domain 2 99 IPR004883 -
Gso10g2296 171 PANTHER LOB DOMAIN PROTEIN 1 171 - -
Gso10g2296 171 MobiDBLite consensus disorder prediction 133 164 - -
Gso10g2296 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2296 Gso-Chr10 50026418 50027943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2296 1 150 AS2 family AT3G49940 60.000 2.30e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso10g2296 LOB 5.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2296 - - gmx:100803780 343.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1059 20 40314817 40316626 Gso10g2296 10 50026418 50027943 GST
Gso1g1657 1 53209443 53210815 Gso10g2296 10 50026418 50027943 PCT
Gso11g0423 11 3735530 3736814 Gso10g2296 10 50026418 50027943 PCT