Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2294 ATGGCTTTGGAGGCTTTGAATTCACCAACAGCAGCCACCACTCCCTTCCGTGGTTACCAAGAAGAGGAGGAGGAGGTTGACCTTCACCTACGCGAGCCTTGGGCCAAGAGAAAACGCTCCAAACGACCTCGTTTTGAGTCGGAGGAAGAGTACTTGGCTCTTTGCCTCATCATGCTTGCACAAAGCGGTAACAACAACAACACCCAATTACCGTCTTCGTCACAGTCACACAAAGAAGCGTCACCGCCGCTGAAACTATCACACAGGTGCACCGTTTGCAACAAGGCTTTTCCTTCTTACCAAGCACTCGGTGGACACAAGGCCAGCCACCGCAAGGCCTCGTCGGAATCCAACACCACCGCCTCCGCCGTCGCCGTCTCTGCCACAGCCAACGACAGCGTTTCCGCTTCGACCGTCGGCGGCGGAAGGATGCACGAGTGTTCCATCTGTCACAAGAGTTTCCCTACCGGTCAGGCCCTGGGTGGCCACAAGCGCTGTCACTACGACGGCGGAAACAACCACAGTAACAGCAACGCCAACGGCAACAACAGCAGCGGCGTCACTACCTCCGACGGCGGCGCTGCCTCCTCCTCCTCCCCCGCGTTCCGTGGGTTTGACCTGAACCTTCCGGCTCCGCTGACGGAGTTCTGGTCGCCGGCGGGGTTTGATTTCGGAAAGAAGAAGGTTGGCGTTGAACAAGAGGTGGAAAGCCCGTTGCCGGTAACCGCCAAGAGGCCGCGTTTGTTTTCGGGGGAAGATAATGAAGAGGCGTAG 774 0.5762 MALEALNSPTAATTPFRGYQEEEEEVDLHLREPWAKRKRSKRPRFESEEEYLALCLIMLAQSGNNNNTQLPSSSQSHKEASPPLKLSHRCTVCNKAFPSYQALGGHKASHRKASSESNTTASAVAVSATANDSVSASTVGGGRMHECSICHKSFPTGQALGGHKRCHYDGGNNHSNSNANGNNSSGVTTSDGGAASSSSPAFRGFDLNLPAPLTEFWSPAGFDFGKKKVGVEQEVESPLPVTAKRPRLFSGEDNEEA* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2294 257 SUPERFAMILY beta-beta-alpha zinc fingers 88 167 IPR036236 -
Gso10g2294 257 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
Gso10g2294 257 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 2 250 IPR044653 GO:0003700
Gso10g2294 257 Gene3D Classic Zinc Finger 85 167 - -
Gso10g2294 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 167 IPR013087 -
Gso10g2294 257 MobiDBLite consensus disorder prediction 231 257 - -
Gso10g2294 257 SMART c2h2final6 88 110 IPR013087 -
Gso10g2294 257 SMART c2h2final6 145 167 IPR013087 -
Gso10g2294 257 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Gso10g2294 257 MobiDBLite consensus disorder prediction 1 26 - -
Gso10g2294 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Gso10g2294 257 Pfam C2H2-type zinc finger 145 169 - -
Gso10g2294 257 Pfam C2H2-type zinc finger 88 112 - -
Gso10g2294 257 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 2 250 - -
Gso10g2294 257 MobiDBLite consensus disorder prediction 177 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2294 Gso-Chr10 50003602 50004906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2294 1 211 C2H2 Transcription Factor Family AT5G67450 46.154 5.66e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso10g2294 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2294 - - gmx:100806788 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1061 20 40342535 40343705 Gso10g2294 10 50003602 50004906 GST