Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2291 ATGGAACCTGTTCAATTGATTTCTGAAGAATGGGGTTCTCTTTGTGGATTTCACACAACTGAAGAAGCTGACTTCATGGCTCAGTTGTTTGGTTGCAACACTTTAGTCACAGAAAAGCACTGTGGAAATACCACTCTTGGCTTTTGGCCTGGGCATGATGAGTCCACAATAGTGGCCATGACAGACACTAATAGCAACTCATACCTTCCTCCAAACGTTACAGATACTAATTTTTTGTGTTTCTCACAAGGGAGTAGCTCCAGTACTGATAATAGTGGTAATAATATCTTTTCCATTACAAGTAGTGGAGCCTACTCCTGTGATCCAGAAGCAAACTTTGATTCTGTGTCCATGGTTTTGTGCCTTGGAGATGCCAAATTTAGTCCCCATAGTTTTCAATGTGATGACAACTCAAGCCAACAGATAAATGAAAACACTGATGAAGAGTCAAGTCTAGACCCATGGAAGTTGGCTATTGCTGACAATAATTTGCAGGCTAAGAGGGAGTATGAAATGATGGTTTCTGAACCTGTAGAAGTGGATAGAAGCAGAAACCTGGAGAACCTAGCAAAAAGACTAAAGAGTTCAATAGAGGTTTCAAAAACATTGAGGAGTGCTAAATCAGGGAAAAATTCAAAATCTGCTTCAGTGAGCAACGATGAAGATGATAGAAGCTTGAGCCTCCAAGCCCAAAGGAATAGCTGTTTTTCACAGAGTGACTCTAATGCTTATCTGGAGCCAAATGGAGGGGCATCAAAAGATCCTGCACCTCCCAATTTGCATAGAAAATCAAGAGCAACTACCGGTGCTGCCACTGATCCACAGAGCCTCTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGTTGAGAATACTGCAAAATCTTGTTCCCAACGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATACGTTAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGACGATCTGTGGATGTATGCTCCAATTGCTTACAATGGAATAAACATTGGACTAGACCTCAGTATTTCTCCAACTAAAGGAATATCAATGTGA 1077 0.4095 MEPVQLISEEWGSLCGFHTTEEADFMAQLFGCNTLVTEKHCGNTTLGFWPGHDESTIVAMTDTNSNSYLPPNVTDTNFLCFSQGSSSSTDNSGNNIFSITSSGAYSCDPEANFDSVSMVLCLGDAKFSPHSFQCDDNSSQQINENTDEESSLDPWKLAIADNNLQAKREYEMMVSEPVEVDRSRNLENLAKRLKSSIEVSKTLRSAKSGKNSKSASVSNDEDDRSLSLQAQRNSCFSQSDSNAYLEPNGGASKDPAPPNLHRKSRATTGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGINIGLDLSISPTKGISM* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2291 358 Gene3D - 273 328 IPR036638 GO:0046983
Gso10g2291 358 Pfam Helix-loop-helix DNA-binding domain 280 320 IPR011598 GO:0046983
Gso10g2291 358 SMART finulus 276 325 IPR011598 GO:0046983
Gso10g2291 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 319 IPR011598 GO:0046983
Gso10g2291 358 PANTHER TRANSCRIPTION FACTOR BHLH54 7 352 - -
Gso10g2291 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 274 335 IPR036638 GO:0046983
Gso10g2291 358 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 352 - -
Gso10g2291 358 MobiDBLite consensus disorder prediction 202 281 - -
Gso10g2291 358 CDD bHLH_AtIND_like 271 333 - -
Gso10g2291 358 MobiDBLite consensus disorder prediction 202 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2291 Gso-Chr10 49965833 49967900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2291 10 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 37.808 1.58e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g2291 HLH 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2291 - - gmx:100816788 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1065 20 40376515 40378523 Gso10g2291 10 49965833 49967900 GST