Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2290 ATGGATCCTGTTGAGCAAATTTCTGAAGAGTGGAGTTCTCTTAGTGGATTCTACACAGCTGAGGAAGCTAACTTTATGAGCCAGTTGCTTGGTAACTGCTCACTCCCTGAGAACCTGTGTGGAAATTTCAATTTGGGAATTCCATCTGCAATATGGCCTGGCCATGAATCCACTATAGTGAGCGTGACAGGAATCAATGAAAGTCCATATTTTCATGCAAATGGTGATAACAATAATAATAATTATTTATGTTTTTCACAAGGAAGTAGCTCCACTGCTGATAGTAGCAATATTTTTCCTACTACAAGTGGTAATAGTTACACTTTGAATGATCCAGTGGCCAACATTGGCTACATGTCCACGGATTTTGCCAATTTAGGCCCATGTAATGTTCAAGGGAGTGACAGCCAACAGTTAAATGAAAACACCCATGAAGAGTTAGGTCTAGAGGTTATTGCTGACAAGAAATTGCAGGATCGCCAGGAATGTGAAGTACTTGTTTCTGAAGCAGCAGAAGAGGATATAAACACCAATCTGGAGAAGTCAGGAAAAAGATCTAGGTGCTCAATGCAGGTGCGAAAGAGCAAGAAAAATGTTAAACCTGTGAAGAAACCAAAATCTGATTCTATAAGTAACTCTGAAGAGGGTAGAAGTCCTCATCTTCAGGGTTGCTGCTCAGAGAATGATGACTCCAGTGCTTCTCAGGAGCTAAATGGAGGAGGATCTTCAAGTTTGAGCCTGGAGGATTCTACATCTCTTAAGTTAAAGGGGAAAAAATCAACAGCTAATAGAGGTTCTGCTACTGATCCACAGAGTGTATATGCAAGGAGAAGAAGAGAAAGAATAAATGAAAGGTTGAAAATCCTACAAAACCTTGTCCCCAATGGAACCAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTGCAGCTCCAAATTAAGCTTCTGAGCTCTGATGATCTCTGGATGTACTCTCCCATTGCTTACAACGGAATGAACATTGGACTAGACCTCAATATTACCCCAACCAAACAACCATAA 1059 0.4079 MDPVEQISEEWSSLSGFYTAEEANFMSQLLGNCSLPENLCGNFNLGIPSAIWPGHESTIVSVTGINESPYFHANGDNNNNNYLCFSQGSSSTADSSNIFPTTSGNSYTLNDPVANIGYMSTDFANLGPCNVQGSDSQQLNENTHEELGLEVIADKKLQDRQECEVLVSEAAEEDINTNLEKSGKRSRCSMQVRKSKKNVKPVKKPKSDSISNSEEGRSPHLQGCCSENDDSSASQELNGGGSSSLSLEDSTSLKLKGKKSTANRGSATDPQSVYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYSPIAYNGMNIGLDLNITPTKQP* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2290 352 MobiDBLite consensus disorder prediction 177 277 - -
Gso10g2290 352 Pfam Helix-loop-helix DNA-binding domain 276 316 IPR011598 GO:0046983
Gso10g2290 352 MobiDBLite consensus disorder prediction 214 270 - -
Gso10g2290 352 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 8 348 - -
Gso10g2290 352 Gene3D - 266 323 IPR036638 GO:0046983
Gso10g2290 352 SMART finulus 272 321 IPR011598 GO:0046983
Gso10g2290 352 CDD bHLH_AtIND_like 267 329 - -
Gso10g2290 352 PANTHER TRANSCRIPTION FACTOR BHLH54 8 348 - -
Gso10g2290 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 315 IPR011598 GO:0046983
Gso10g2290 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 265 331 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2290 Gso-Chr10 49961135 49962929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2290 10 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 38.211 1.21e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g2290 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2290 - - gmx:100805192 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1066 20 40380979 40382837 Gso10g2290 10 49961135 49962929 GST