Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2270 ATGTCTGGCCCAAAGAAAAGCCGTGGCCGCCAAAAGATCGAGATGAAGAAAATGAGCAACCAGAGCAACCTTCAAGTCACATTCTCCAAGCGCCGCAACGGGCTTTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGGTACTGACGTGGCGCTCGTTGTTTTCTCTCCTGGTCAGAAGGTGTTTTCCTTTGGCCACCCCAACGTGGATGCCGTCATTGACCGCTATCTCGCACGGCCCCCACCGACGGACTCCGGCACCATGCAGATCATCGAGGCCCACCGCATGGCCCACGTGCATGACCTCAACGTACAACTCACTCAGATCAACAACCAGCTTGACCATGAGAGGAAGCGCACCAATGAGCTCAATCTCATGAACAAGGAAGCCCAAGCCCAGATGTGGTGGGCACGGCCCGTGGATGGGATGAGTATGGCCCAAGTGAAGCAGTTCAAGGCGGCGTTGGAGGAGATGAAGAAGCAGGTTGCGCGCCTTGTCGATAGGGCTATGCTTCAGAGTGTTACAAACCCAACTCTTCAATTTTTCCCCGGGGTTTCTTCCTCTTCCAATTCCAACCTTGTGCATCAGCCACACCCACTTCCAGCTCCGCAGGTGTTCACCCCACACCTGATTCAGCCACCCATGCTTCAGAACTTCATGTTTCATGATGGGAGCATGATGCGCCACCATGGGTTTGATAACATTGGAATGGGAGGATATGGACCTACTGCGGGTTTCTTTTGA 744 0.5349 MSGPKKSRGRQKIEMKKMSNQSNLQVTFSKRRNGLFKKASELCTLCGTDVALVVFSPGQKVFSFGHPNVDAVIDRYLARPPPTDSGTMQIIEAHRMAHVHDLNVQLTQINNQLDHERKRTNELNLMNKEAQAQMWWARPVDGMSMAQVKQFKAALEEMKKQVARLVDRAMLQSVTNPTLQFFPGVSSSSNSNLVHQPHPLPAPQVFTPHLIQPPMLQNFMFHDGSMMRHHGFDNIGMGGYGPTAGFF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2270 247 SUPERFAMILY SRF-like 9 82 IPR036879 GO:0003677|GO:0046983
Gso10g2270 247 Gene3D - 20 85 IPR036879 GO:0003677|GO:0046983
Gso10g2270 247 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 7 197 - -
Gso10g2270 247 CDD MADS_MEF2_like 9 77 IPR033896 GO:0000977|GO:0045944
Gso10g2270 247 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Gso10g2270 247 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Gso10g2270 247 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Gso10g2270 247 MobiDBLite consensus disorder prediction 1 23 - -
Gso10g2270 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Gso10g2270 247 Gene3D - 86 178 - -
Gso10g2270 247 Coils Coil 148 168 - -
Gso10g2270 247 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Gso10g2270 247 PANTHER MADS BOX PROTEIN 7 197 - -
Gso10g2270 247 Coils Coil 99 133 - -
Gso10g2270 247 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2270 Gso-Chr10 49770954 49771697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2270 5 246 Type I MADS-box Gene Family AT5G60440 44.715 1.17e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso10g2270 SRF-TF 1.5e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2270 - - gmx:100794751 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1087 20 40617763 40618491 Gso10g2270 10 49770954 49771697 GST