Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2269 ATGTCATCATCCGAAGCTAAGAAAAGCCGTGGCCGCCAAAGGATTGAGATTAAGAAAATGAGCAACGACATCAACCTCCAAGTCACCTTCTCCAAGCGCCGCAGCGGGCTTTTCAAGAAAGCCAGCGAGCTTTGCACTCTCTGCGGCGCCAGCGTGGCTTTGGTGGTGTTCTCGCCGGGGGAGAAAGTGTTCTCCTTCGGCCACCCCAGCGTGGATGGCGTCATAGAGCGTTATCTCAAGCGAGGCCCACCGCCGGAGGCTGGCAACATGCACTACATGGCCAAAGTCATTGAGCTCAACGGCCAGCTGACTCATATCAACGATCAGCTCGAGGCGGAGAGGAAGCACGCCGAGAAGCTGAATAGAAAGCAGAAGGAGGCCGAAGCCCAGCTCTGGTGGGCCCGGCCCGTGGAAGGGATGATCATTATGGAAAACCTTGAGAAGTTGAAGAAAGCGTTTGAGGAGCTGAAGCAACAAGTGGCCGGTCTTGCTGATATGGCTTTGTCCCAGTCTGTTGCAAATGGAAATCCGGGCCATCAGTTTTTTCCTGGGGCTTCTTCCTCAGCCATTCCCAACGTTGTGCTTCAACCACCATCACTGCCAGTGGCCCAGGTGTTCCCTCCTATTACACATATGATGCTGCCACCACCACCCATTATGTTTCAGAATTACACGCTTCCTGATCATGGGAGCATGATGATGAACCCCAATGGGTTTAATAATGACATGGGAATGGGAGGAGGAGGAGCATTTGGAGTACCAGGACCTTCTAGTGCTGGTGGTTGTTTCTTGTGA 795 0.5308 MSSSEAKKSRGRQRIEIKKMSNDINLQVTFSKRRSGLFKKASELCTLCGASVALVVFSPGEKVFSFGHPSVDGVIERYLKRGPPPEAGNMHYMAKVIELNGQLTHINDQLEAERKHAEKLNRKQKEAEAQLWWARPVEGMIIMENLEKLKKAFEELKQQVAGLADMALSQSVANGNPGHQFFPGASSSAIPNVVLQPPSLPVAQVFPPITHMMLPPPPIMFQNYTLPDHGSMMMNPNGFNNDMGMGGGGAFGVPGPSSAGGCFL* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2269 264 SUPERFAMILY SRF-like 11 90 IPR036879 GO:0003677|GO:0046983
Gso10g2269 264 Coils Coil 139 166 - -
Gso10g2269 264 SMART madsneu2 10 69 IPR002100 GO:0003677|GO:0046983
Gso10g2269 264 Coils Coil 103 130 - -
Gso10g2269 264 CDD MADS_MEF2_like 11 80 IPR033896 GO:0000977|GO:0045944
Gso10g2269 264 ProSiteProfiles MADS-box domain profile. 10 70 IPR002100 GO:0003677|GO:0046983
Gso10g2269 264 PRINTS MADS domain signature 12 32 IPR002100 GO:0003677|GO:0046983
Gso10g2269 264 PRINTS MADS domain signature 32 47 IPR002100 GO:0003677|GO:0046983
Gso10g2269 264 PRINTS MADS domain signature 47 68 IPR002100 GO:0003677|GO:0046983
Gso10g2269 264 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED 10 164 - -
Gso10g2269 264 Gene3D - 22 86 IPR036879 GO:0003677|GO:0046983
Gso10g2269 264 PANTHER MADS BOX PROTEIN 10 164 - -
Gso10g2269 264 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 66 IPR002100 GO:0003677|GO:0046983
Gso10g2269 264 Gene3D - 87 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2269 Gso-Chr10 49759821 49760808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2269 6 188 Type I MADS-box Gene Family AT5G60440 48.691 1.61e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso10g2269 SRF-TF 3.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2269 - - gmx:100794229 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1088 20 40630350 40631506 Gso10g2269 10 49759821 49760808 GST