LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso10g2264	ATGGTTGTGCTTTCATCAAGTCTACTTTCCTTTGTTTTTTGTCTTCTCGTAACAATTTTTACATCTGAAGCCAGCACCGATACAGAAATACAAGTACACAATAATACACAAAACTACCACTACTGCTGTGATTTTAATCACGTTAGAGGAAACTACACAGCCAACAGCACCTATCACACGAACCTCAACACCCTTTTGTCCACTCTCACTTCTAATACAGAGATTGAATACGGTTTTTACAATTCCTCACAAGGGGAGAACACTGACAAAGTGTACGCCATTGGGCTGTGCACAGGTGACATTAAGCCAGATGAATGCCGCAATTGCCTCAACGGTTCCAGGGCCAATCTCACAGAGCTCTGTCCAAACCAGAAAGAAGCAATTGGGTGGTACGAGGATGAGAAATGCATGTTGCGCTACTCAGATCGCTCAATATTGGATCTCATGGAAACTGGACCTGCGTTTTATGCTAACAACATGGACAACGCAACGGACTTGGATCAGTTCAATAAAGATGTCAACACCTTGCTGGGTAACTTGAAAAACGAAGCTGCATTAGGTGACTCTCGTCTTAAGTATGCCGTAGGAAATACATCTGGTCCTGATAATAAGCTCATATATGGTCTTGTTCAGTGCACACCGGACTTGTCAGGGTCAGAGTGCTTCGATTGCTTGTCTCAGTCCATTGAACGTATCCCGATAGATTGCTGTAAAGACAGAAAAGGTGGCAGGGTTGTTAGACCAAGTTGTAATATGAGGTTCGAAACCTCCTTTCTCTTCTATGGAGATACAGCATATGTATCGCCAACTCCCCCTTCCTCTACCACCACTAACACTACCTCAGAAGTAAAAAGCAACAAGGCAACTATCATCGCCATAGCAATAGCAGTACCAGTTGTTGTATTTTTTGCTGTGGTGCTCATTTTTTTCTTCATCTGTATAAGAATGAGGAAGCCAGGGGAAAAGTTTGAAGCTCAACAAGAAACATATGATGATGATGATGATAATGAAATTGACATTTCTGAGTCATTGCAATTCAGCTTTAACACCATACGAGAGGCTACAAATGACTTCTCTGATTCCAATAAACTTGGACAAGGCGGATTTGGGGCTGTTTACAAAGGTAGGCTTATCAATGGACAAGAGATTGCAGTCAAAAGGTTGTCAAGAGATTCGGGTCAAGGAGAGAGAGAATTTAAGAATGAAGTGCTTATAGTGGCCAAGCTTCAGCACCGAAATTTAGTTAGGCTACTTGGTTTCTGCTTGGAAGGAAGAGAAAGGCTACTTGTCTATGAATTTGTTACTAATAAAAGCCTTGATTACTTCATATTTGATCAAACCAATAGAGCACAACTAGATTGGGAAAAGCGCTACAAAATCATAGCAGGTACTGCTCGAGGTATTCTCTATCTCCATCAGGACTCTCGCTTGCGCGTTATCCATCGTGATCTCAAAGCAAGTAACATTCTCTTAGACGAAGATATGAATCCTAAGATAGCCGATTTTGGCTTGGCAAGATTGTTTGTTGTGGACCAAACTCATGCAGATACAAATAGAGTTGTTGGAACCTATGGATACATGGCACCTGAGTATGCAATGCATGGCCAGTTTTCAGAGAAGTCAGATGTTTTTAGTTTTGGTGTATTGGTTCTTGAGGTTGTAAGTGGCCAGAGAAATAGTGGCATTCGTCACGGAGAGAATATAGATGATCTACTGAGTTTTGCATGGCGAAGATGGAAGGAAGGAAGAGCTACAGATATCATAGATCCCACAGTAAACAGCGGTTCACGGAATGAAATAATGAGATGCATCCACATTGGGTTACTCTGTGTTCAAGACAATGTAGCTGCCAGACCCACCATGGCTTCCATTGTACTCGTTCTTAATAGCCATTCTCTCTCTCTCCCACTACCTTTAGAACCTGCATTTTACCTGGATAGTAGAACTGGAAACCTTCCAAACATGCAGCTATGGGAGCTTAATTCAGAAACAACAAGATCAAACGAATACACAACTAGATCAGCTCAGGAATCGGTCAATGAGGCTTCAGTCACTGAGCCATATCCTCGCTAG	2073	0.4206	MVVLSSSLLSFVFCLLVTIFTSEASTDTEIQVHNNTQNYHYCCDFNHVRGNYTANSTYHTNLNTLLSTLTSNTEIEYGFYNSSQGENTDKVYAIGLCTGDIKPDECRNCLNGSRANLTELCPNQKEAIGWYEDEKCMLRYSDRSILDLMETGPAFYANNMDNATDLDQFNKDVNTLLGNLKNEAALGDSRLKYAVGNTSGPDNKLIYGLVQCTPDLSGSECFDCLSQSIERIPIDCCKDRKGGRVVRPSCNMRFETSFLFYGDTAYVSPTPPSSTTTNTTSEVKSNKATIIAIAIAVPVVVFFAVVLIFFFICIRMRKPGEKFEAQQETYDDDDDNEIDISESLQFSFNTIREATNDFSDSNKLGQGGFGAVYKGRLINGQEIAVKRLSRDSGQGEREFKNEVLIVAKLQHRNLVRLLGFCLEGRERLLVYEFVTNKSLDYFIFDQTNRAQLDWEKRYKIIAGTARGILYLHQDSRLRVIHRDLKASNILLDEDMNPKIADFGLARLFVVDQTHADTNRVVGTYGYMAPEYAMHGQFSEKSDVFSFGVLVLEVVSGQRNSGIRHGENIDDLLSFAWRRWKEGRATDIIDPTVNSGSRNEIMRCIHIGLLCVQDNVAARPTMASIVLVLNSHSLSLPLPLEPAFYLDSRTGNLPNMQLWELNSETTRSNEYTTRSAQESVNEASVTEPYPR*	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso10g2264	690	Gene3D	Phosphorylase Kinase; domain 1	321	433	-	-
	Gso10g2264	690	MobiDBLite	consensus disorder prediction	663	690	-	-
	Gso10g2264	690	SMART	serkin_6	358	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso10g2264	690	CDD	STKc_IRAK	364	629	-	-
	Gso10g2264	690	Pfam	Salt stress response/antifungal	43	142	IPR002902	-
	Gso10g2264	690	Pfam	Salt stress response/antifungal	161	256	IPR002902	-
	Gso10g2264	690	Gene3D	-	37	144	IPR038408	-
	Gso10g2264	690	Gene3D	-	154	258	IPR038408	-
	Gso10g2264	690	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	7	674	-	-
	Gso10g2264	690	SUPERFAMILY	Protein kinase-like (PK-like)	340	628	IPR011009	-
	Gso10g2264	690	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	479	491	IPR008271	GO:0004672\|GO:0006468
	Gso10g2264	690	Gene3D	Transferase(Phosphotransferase) domain 1	434	634	-	-
	Gso10g2264	690	ProSitePatterns	Protein kinases ATP-binding region signature.	364	386	IPR017441	GO:0005524
	Gso10g2264	690	Pfam	Protein tyrosine and serine/threonine kinase	361	625	IPR001245	GO:0004672\|GO:0006468
	Gso10g2264	690	ProSiteProfiles	Gnk2-homologous domain profile.	151	259	IPR002902	-
	Gso10g2264	690	MobiDBLite	consensus disorder prediction	663	683	-	-
	Gso10g2264	690	ProSiteProfiles	Gnk2-homologous domain profile.	40	145	IPR002902	-
	Gso10g2264	690	ProSiteProfiles	Protein kinase domain profile.	358	634	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso10g2264	690	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	7	674	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso10g2264	Gso-Chr10	49722643	49730429	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso10g2264	38	690	Receptor kinase-like Gene Family	AT4G21410	50.520	0.0	607

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gso10g2264		Pkinase	1.4e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso10g2264	-		-	gmx:113000774	947.962