Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2263 ATGGCTGCTGTTTCTTTAAGGCTCCTTTGCTTTCTTTTTTTTCTCTGTTTCACAATAACATCACCAGCCGCGCAGACATGTGATAACGACACAGGGAACTACACAGTAAACAGCACGTATCACAACAACCTCAACACCCTCTTATCCAGTTTCTCTTCCCACAAAGAAATCAATTACGGTTTCTACAATTTCTCTCATGGCCAACACCCAGACAGAGTATACGCCATTGGGCTCTGCAGAGGAGACCAAAAGCCTGATGATTGCCTCAAATGCCTCAACAATTCCAGAGTCTCTCTCGCAAAGGAGTGTCCAAACCAGAAACATGCGATTGATTGGGGTATAGAGTGCATGTTGCGCTACTCCAACCGCTCCATATTTAGCCTCATGGAAACTCAACCTATGGTGGAACTCGTGTACACGTTGGATGTAAAGGGTTCAGTGGAACAATTCAACGAGGCGCTGCAGAGCTTGATGAGGAATCTAACACGCACAGCTGCATCAAGTGACTCTCGTCTCAAGTATGCTACGGCTAGCACACCTGCTCCGAGTTTTCAAACCATATTTGGTTATACGCAGTGCACCCCTGATTTGTCATCGGAAGATTGCACCAAGTGCTTGGAAGAAGCTATTTCAAAAATTCCAGAGTGTTGTAGTGGCAAGGCTGGTGGCAATGTTTTAAAACCCAGTTGTAGAATTAGATTTGACCCCTACGTCTTCTATGGACCAACATTAAAATTAGACTCAGATGCACCATCAGTGTCCACCAACAAAACTTCTTCTTCACCAGGAAAGAGCAACAACACATCAAGAACTATCATCGCCATAGCAGTGCCAGTTGCCAGTGTTGTTTTAGCGCTCAGTCTTTTCTGCATCTATCTAACAGTGAGGAAGCCAAGAAAAAAAACTGAAATTAAAAGAGAAGAAGAAGATAGTCATGAAGATGAAATTACAATTTCTGAGTCATTGCAATTCAACTTTGACACCATTCGAGTTGCTACAAATGAATTCGACGATTCTAATAAACTTGGACAAGGCGGGTTTGGAGCTGTTTACAGAGGTCGGCTTTCCAATGGACAAGTAATTGCTGTCAAAAGGTTGTCAAGGGATTCTGGGCAAGGAAATATGGAATTCAAGAATGAAGTGCTTTTACTGGTCAAGCTTCAACACCGAAATTTAGTTAGACTACTTGGGTTCTGCTTGGAAGGGAGAGAAAGGCTGCTTGTCTATGAATTTGTTCCTAATAAGAGCCTTGATTACTTCATATTTGATCCAGTGAAGAAAACACGATTGGATTGGCAAATGCGCTACAAAATCATTAGAGGTATTGCTCGAGGAATTCTCTACCTCCATGAGGATTCTCGACTGCGAATTATACATAGAGACCTTAAAGCAAGCAACATTCTCTTGGATGAAGAGATGCATCCTAAGATATCAGATTTTGGGATGGCAAGATTGGTTCACTTGGATCAAACACAAGCAAATACAAATAGAGTTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATACATGGTCAATTTTCAGCAAAATCAGATGTTTTTAGTTTCGGTGTATTGGTTCTTGAGATTGTAAGTGGCAAAAGAAACAGTGGTAATCGTCGTGGGGAGAACGTGGAGGATCTATTGAGCTTTGCATGGCGAAACTGGAGAAATGGAACAACTGCAAATATTGTAGATCCCACATTAAACGACGGTTCTCAAGATGAAATGATGAGATGCATCCACATTGGGTTATTATGTGTTCAAAAAAATGTGGCTGCCAGACCAACCATGGCTTCTGTTGTACTCATGCTTAATAGTTATTCTCTCACTCTCTCAGTGCCTTCAGAACCTGCATTTGTTGTGGATAGTAGAACTAGAAGCCTTCCAGACACACTATCATCAGAGTATAATTCAAGGGAAACAAGATCAAATAAATCAACTGAATATTCGGTAGATGAGGCTTCAATTACGGAGCCATATCCTCGCTAG 1995 0.4175 MAAVSLRLLCFLFFLCFTITSPAAQTCDNDTGNYTVNSTYHNNLNTLLSSFSSHKEINYGFYNFSHGQHPDRVYAIGLCRGDQKPDDCLKCLNNSRVSLAKECPNQKHAIDWGIECMLRYSNRSIFSLMETQPMVELVYTLDVKGSVEQFNEALQSLMRNLTRTAASSDSRLKYATASTPAPSFQTIFGYTQCTPDLSSEDCTKCLEEAISKIPECCSGKAGGNVLKPSCRIRFDPYVFYGPTLKLDSDAPSVSTNKTSSSPGKSNNTSRTIIAIAVPVASVVLALSLFCIYLTVRKPRKKTEIKREEEDSHEDEITISESLQFNFDTIRVATNEFDDSNKLGQGGFGAVYRGRLSNGQVIAVKRLSRDSGQGNMEFKNEVLLLVKLQHRNLVRLLGFCLEGRERLLVYEFVPNKSLDYFIFDPVKKTRLDWQMRYKIIRGIARGILYLHEDSRLRIIHRDLKASNILLDEEMHPKISDFGMARLVHLDQTQANTNRVVGTYGYMAPEYAIHGQFSAKSDVFSFGVLVLEIVSGKRNSGNRRGENVEDLLSFAWRNWRNGTTANIVDPTLNDGSQDEMMRCIHIGLLCVQKNVAARPTMASVVLMLNSYSLTLSVPSEPAFVVDSRTRSLPDTLSSEYNSRETRSNKSTEYSVDEASITEPYPR* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2263 664 ProSiteProfiles Protein kinase domain profile. 336 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2263 664 MobiDBLite consensus disorder prediction 628 642 - -
Gso10g2263 664 Gene3D Transferase(Phosphotransferase) domain 1 412 615 - -
Gso10g2263 664 SMART serkin_6 336 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2263 664 ProSiteProfiles Gnk2-homologous domain profile. 131 239 IPR002902 -
Gso10g2263 664 MobiDBLite consensus disorder prediction 628 664 - -
Gso10g2263 664 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 651 - -
Gso10g2263 664 Gene3D Phosphorylase Kinase; domain 1 297 411 - -
Gso10g2263 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Gso10g2263 664 SUPERFAMILY Protein kinase-like (PK-like) 321 635 IPR011009 -
Gso10g2263 664 Gene3D - 21 124 IPR038408 -
Gso10g2263 664 Gene3D - 138 239 IPR038408 -
Gso10g2263 664 CDD STKc_IRAK 342 607 - -
Gso10g2263 664 ProSiteProfiles Gnk2-homologous domain profile. 22 125 IPR002902 -
Gso10g2263 664 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Gso10g2263 664 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 651 - -
Gso10g2263 664 Pfam Protein kinase domain 337 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2263 664 Pfam Salt stress response/antifungal 27 122 IPR002902 -
Gso10g2263 664 Pfam Salt stress response/antifungal 148 235 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2263 Gso-Chr10 49692901 49696346 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2263 16 621 Receptor kinase-like Gene Family AT4G38830 51.282 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso10g2263 Pkinase 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2263 - - gmx:100791582 1295.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1104 20 40848533 40852264 Gso10g2263 10 49692901 49696346 GST
Gso1g2056 1 56938412 56942517 Gso10g2263 10 49692901 49696346 PCT