Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2260 ATGGCCATGATTCCTTTGATGATGATGATACTGCTGTTGCTGTTTAAATTTCCTTCTGTCGTCCTTGCCACACTCAAATCTGATGAAGCCAACCTCGAGCTAGTATTCACATACCATAAATGTAACGAAGAGCTCGGAAACTTTACCACTGAGACCTACTCCAACAACCGGAATGTCCTTCTGTCCAATATGTATTCTGACAAAGAAATTGAGAATGGCTTCTACAATTCCTCATACGGCGAAGGCCCTGACAAAGTTTACGGTATCGGCTTCTGCAGAGGAGATGTTAAGCCAGATAAATGCCGTAGTTGCCTGGAAAAGTCCTCGACACTTCTCACCGATCGATGTCCAGTACAGAAAGAGGCGATTGGATGGTATGACCTATGCATGTTACGCTACTCCAACCGCTCAATAGTTGAGCAACCAGTTACTGATACTGACGACATCATCAAATGTAGCAACACTAACGCCACAAACAAAGATCGGTTTGATAAAGAGCTTGATGACTTGGTGGTGAGAATGAGAAGCAGGTCTGCAGAGGGTGACTCACGTCTCAAGTTTGCAGAGGGAGAGGCTCCGGTTCAATCAAGCAATGAAACCATACATGCTCTCCTTCAGTGCGTGCCTTATTTGTCTCACCAAAACTGTACTCGATGCTTGGAGTACGCTATGTCCAGGATTTCATATTGGTGTGATGGAAAAACAGGTGGTTGGTATCTAGGACGAAGCTGTTCTTTAAGATATGAGACCTACCTCTTCTTTGAGCTCATATTCCACGATGCACCAGCACCACAGCCTTCCCAACCTGCAGTTACCCCTACAAAAGATTTTCCGAAAAAGACCAACCCATCGCGAAATATCATTGTTATAGTCGTGCCAGTGTTCGCCGTTGCCATTGTCGTTGTGGGACTCATAGTTCTTATCTACAATTATTTTGGAGCGAGAAGACCAAGACACAAACCTATCCAAAGTGAAGGTGATGGTGAAGGTGATGGTGAAGGTGAAGGTGAGCTTGATAATGACATTAAAACAGATGAGTTAGCGCAATTTGAATTTGCTACCATCAAATTTGCAACAAATAACTTCTCTGATGCAAATAAGCTTGGTCAAGGTGGATTCGGAATTGTTTATAAGGGTACGCTCTCTGATGGACAAGAAATTGCAATTAAAAGATTGTCTATCAATTCTAACCAAGGAGAAACAGAATTTAAGACTGAAATTTCGCTAACAGGAAAGCTTCAGCACCGAAACTTAGTTAGACTACTTGGCTTCTGTTTTGCAAAAAGAGAAAGATTATTGATATATGAGTTCGTTCCCAATAAAAGCCTTGATTTTTTCATATTTGATCCAAACAAACGTGGGAATTTGAATTGGGAAAGACGCTACAATATCATAAGAGGCATCGCTCGCGGTCTTCTTTACCTTCATGAAGATTCTAGATTACAAGTTGTTCATCGTGATCTCAAAATAAGTAACATTTTGTTGGATGAAGAGTTGAACCCCAAAATATCAGATTTTGGCATGGCAAGATTATTTGAGATCAATCAAACTGAAGCCAATACAAATACAGTTGTCGGGACCTTTGGATATATGGCTCCTGAGTATATTAAACATGGGCAGTTTTCAGTCAAGTCAGACGTTTTTAGTTTTGGTGTAATGATGTTGGAAATTGTATGCGGCCAAAGAAACAGTAAGATTCGTGGTAATGAGGAAAATGCAGAAGATCTATTAAGCTTTGCATGGAAAAACTGGAGGGGAGGGACAGTTTCAAATATTGTAGATACCACACTGAAGGATTATTCTTGGGATGAAATAAAGAGATGCATCCATATTGGATTACTATGCGTTCAAGAAGATATAAATGGCAGACCAACTATGAATTCTGTTTCAATAATGCTTAACAGCAGCTCTTTCTCCCTTGCTGAACCTTCTGAACCTGCATTTTTAATGCGTGGTAAAAGTCAATTGCCTATGATTATGCTGTCTGGTAGTGAGCAATATTCAGAGGCAACAAAGTCAAGTGATTCAGGAAGTCAATTTGCTCAAGGATCATCAAATAAGGCTCCAATCACCGAGCCATATCCTCGTTAG 2091 0.4075 MAMIPLMMMILLLLFKFPSVVLATLKSDEANLELVFTYHKCNEELGNFTTETYSNNRNVLLSNMYSDKEIENGFYNSSYGEGPDKVYGIGFCRGDVKPDKCRSCLEKSSTLLTDRCPVQKEAIGWYDLCMLRYSNRSIVEQPVTDTDDIIKCSNTNATNKDRFDKELDDLVVRMRSRSAEGDSRLKFAEGEAPVQSSNETIHALLQCVPYLSHQNCTRCLEYAMSRISYWCDGKTGGWYLGRSCSLRYETYLFFELIFHDAPAPQPSQPAVTPTKDFPKKTNPSRNIIVIVVPVFAVAIVVVGLIVLIYNYFGARRPRHKPIQSEGDGEGDGEGEGELDNDIKTDELAQFEFATIKFATNNFSDANKLGQGGFGIVYKGTLSDGQEIAIKRLSINSNQGETEFKTEISLTGKLQHRNLVRLLGFCFAKRERLLIYEFVPNKSLDFFIFDPNKRGNLNWERRYNIIRGIARGLLYLHEDSRLQVVHRDLKISNILLDEELNPKISDFGMARLFEINQTEANTNTVVGTFGYMAPEYIKHGQFSVKSDVFSFGVMMLEIVCGQRNSKIRGNEENAEDLLSFAWKNWRGGTVSNIVDTTLKDYSWDEIKRCIHIGLLCVQEDINGRPTMNSVSIMLNSSSFSLAEPSEPAFLMRGKSQLPMIMLSGSEQYSEATKSSDSGSQFAQGSSNKAPITEPYPR* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2260 696 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 15 696 - -
Gso10g2260 696 CDD STKc_IRAK 368 634 - -
Gso10g2260 696 MobiDBLite consensus disorder prediction 320 339 - -
Gso10g2260 696 ProSiteProfiles Gnk2-homologous domain profile. 34 138 IPR002902 -
Gso10g2260 696 ProSiteProfiles Protein kinase domain profile. 362 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2260 696 Pfam Salt stress response/antifungal 41 135 IPR002902 -
Gso10g2260 696 Pfam Salt stress response/antifungal 152 251 IPR002902 -
Gso10g2260 696 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 696 - -
Gso10g2260 696 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524
Gso10g2260 696 Pfam Protein kinase domain 363 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2260 696 Gene3D - 33 137 IPR038408 -
Gso10g2260 696 Gene3D - 148 253 IPR038408 -
Gso10g2260 696 SUPERFAMILY Protein kinase-like (PK-like) 347 667 IPR011009 -
Gso10g2260 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Gso10g2260 696 Gene3D Transferase(Phosphotransferase) domain 1 438 643 - -
Gso10g2260 696 MobiDBLite consensus disorder prediction 665 689 - -
Gso10g2260 696 Gene3D Phosphorylase Kinase; domain 1 333 437 - -
Gso10g2260 696 MobiDBLite consensus disorder prediction 665 696 - -
Gso10g2260 696 SMART serkin_6 362 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2260 696 ProSiteProfiles Gnk2-homologous domain profile. 145 253 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2260 Gso-Chr10 49665018 49669903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2260 46 650 Receptor kinase-like Gene Family AT4G21410 45.968 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso10g2260 Pkinase 1.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2260 - - gmx:100789471 1350.11