Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2259 ATGGCTGCTGTTTCTTTAAGGCTCCTTTCCTTTCTTTGTTGTCTGTTTGTCATCATAATATCACAAGCCAGTGCCCAGACATGTGATAACAGCAGAGGCAACTACACAATAAACAGCACCTATCACAACAACCTCAACACTCTCTTATCCAATTTCTCTTCCCACACAGAAATCAACTATGGTTTCTACAATTTCTCCTATGGCCAAGAACCAGACAAAGTATACACCATTGGGCTCTGCAGAGGCGATCAAAACCAGAATCAGTGCCTCAAATGCCTAAACGAATCGAGAGTGTCTCTGGCAGATAAATGTCCAAACCAGAAAGAGGCAATTGATTGGAGAGGAGAGTGCATGCTGCGCTACTCTAACCGTTCCATATTTGGGCTCATGGAAAATAATCCTAAGGTGCTACTCGTGAGACAAGAGAATGTAACAGGTTCATTGGATGAATTCACTGAGGTGCTGGGGAACTTGATGAGGAATCTATCAAGCACAGCTGCATCAGGTGACTCTCGTCGTAAGTATGCTACAGGAAGCATGCCTACTTCAAATTTTCAAATCACATACGGGTTTACAGAGTGCACACCTGATTTGTCATTGCAAGAGTGCACTCAGTGCTTGGGTGAAGCTATCGCGGATATCCCAGTTTATTTTAATGGGAAAACTGGAGGTAATGTTTTAAAACCCAGTTGTAGAATTAGATTTGATCCCTACTCCTTCTACGGATCTACGCTGAAATTAGACCCAGATGCACCGCCACCAGCGACCCCGCTACCATCACCGCCCACCAACAACAATTCTTCTTCACAAGGAAAGAGCAACACATCACGAATTATCATTGCCATAGTAGTACCAGTTGCTAGTGTTGTTTTGGTGCTCATTCTTTTCTGCATCTATCTAAGAGTGAAGAAGCCAAGAAAAGAAAATGAGATTAAAAGAGAAGAAGATAATTATGAAGATGAAATTACATTTGCTGAGTCATTGCAATTCAACTTTGACACCATACGAGTTGCTACAAATGAATTTGCTGATTCTTATAAACTTGGACAAGGCGGGTTTGGAGCTGTTTACAGAGGTCAGCTTTCCAACGGACAAGAGATTGCAGTAAAAAGGTTGTCAAGGAATTCTGGGCAAGGAGATATGGAATTTAAGAATGAAGTTCTTTTAGTGGCCAAGCTTCAGCACCGGAATTTAGTTAGGCTACTTGGTTTCTGTCTGGAAGGAACAGAAAGACTACTTGTCTATGAATTTGTTCCTAATAAAAGCCTTGATTACTTCATATTTGATCCAATAAAGAAAGCACAATTGAATTGGCAAAGGCGTTACAAAATCATTGGAGGTATTGCTCGAGGCATTCTCTACCTCCATGAAGATTCTCGACTGCGTATTATACATCGTGACCTCAAAGCAAGCAACATTCTCTTGGATGAAGAGATGCATCCTAAGATATCTGATTTTGGGATGGCAAGATTGGTTCACATGGATCAGACTCAGGGAAATACAAGTAGAATTGTTGGGACCTATGGATATATGGCACCCGAGTATGCATTATATGGTCAGTTTTCAGCAAAATCAGATGTTTTTAGTTTTGGTGTACTAGTTCTTGAGATTATAAGTGGCCAAAAAAACAGTGGTGTTCGTCATGGGGAGAACGTGGAGGATCTATTGTGCTTTGCATGGAGAAACTGGAGGGCAGGAACAGCTTCAAATATTGTAGACCCCACGTTAAACGACGGTTCTCAAAATGAAATAATGAGATGCATCCACATTGGATTATTATGTGTTCAAGAAAATGTGGTTGCCAGACCAACCATGGCTTCTATTGGTCTCATGCTTAATAGCTATTCTCTCACTCTCCCGGTGCCTTCAGAACCTGCACTTCTTGTGGATAGTAGAACTAGAAGCCTTTCAGAGCATGACTCAATGGAAACAAGAACAAGTGAATCAGCCAATCAATCAACACCCAAATCGATAAATGAGGTTTCAATCACTGAGCTATATCCTCGTTAG 2010 0.4134 MAAVSLRLLSFLCCLFVIIISQASAQTCDNSRGNYTINSTYHNNLNTLLSNFSSHTEINYGFYNFSYGQEPDKVYTIGLCRGDQNQNQCLKCLNESRVSLADKCPNQKEAIDWRGECMLRYSNRSIFGLMENNPKVLLVRQENVTGSLDEFTEVLGNLMRNLSSTAASGDSRRKYATGSMPTSNFQITYGFTECTPDLSLQECTQCLGEAIADIPVYFNGKTGGNVLKPSCRIRFDPYSFYGSTLKLDPDAPPPATPLPSPPTNNNSSSQGKSNTSRIIIAIVVPVASVVLVLILFCIYLRVKKPRKENEIKREEDNYEDEITFAESLQFNFDTIRVATNEFADSYKLGQGGFGAVYRGQLSNGQEIAVKRLSRNSGQGDMEFKNEVLLVAKLQHRNLVRLLGFCLEGTERLLVYEFVPNKSLDYFIFDPIKKAQLNWQRRYKIIGGIARGILYLHEDSRLRIIHRDLKASNILLDEEMHPKISDFGMARLVHMDQTQGNTSRIVGTYGYMAPEYALYGQFSAKSDVFSFGVLVLEIISGQKNSGVRHGENVEDLLCFAWRNWRAGTASNIVDPTLNDGSQNEIMRCIHIGLLCVQENVVARPTMASIGLMLNSYSLTLPVPSEPALLVDSRTRSLSEHDSMETRTSESANQSTPKSINEVSITELYPR* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2259 669 MobiDBLite consensus disorder prediction 646 661 - -
Gso10g2259 669 Gene3D - 136 240 IPR038408 -
Gso10g2259 669 Gene3D - 21 125 IPR038408 -
Gso10g2259 669 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 5 651 - -
Gso10g2259 669 CDD STKc_IRAK 348 613 - -
Gso10g2259 669 ProSiteProfiles Gnk2-homologous domain profile. 132 240 IPR002902 -
Gso10g2259 669 Pfam Protein tyrosine and serine/threonine kinase 347 543 IPR001245 GO:0004672|GO:0006468
Gso10g2259 669 ProSiteProfiles Gnk2-homologous domain profile. 23 126 IPR002902 -
Gso10g2259 669 MobiDBLite consensus disorder prediction 250 272 - -
Gso10g2259 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 463 475 IPR008271 GO:0004672|GO:0006468
Gso10g2259 669 MobiDBLite consensus disorder prediction 631 669 - -
Gso10g2259 669 Pfam Salt stress response/antifungal 149 236 IPR002902 -
Gso10g2259 669 Pfam Salt stress response/antifungal 28 123 IPR002902 -
Gso10g2259 669 SUPERFAMILY Protein kinase-like (PK-like) 330 651 IPR011009 -
Gso10g2259 669 Coils Coil 308 328 - -
Gso10g2259 669 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 5 651 - -
Gso10g2259 669 Gene3D Transferase(Phosphotransferase) domain 1 418 618 - -
Gso10g2259 669 SMART serkin_6 342 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2259 669 ProSitePatterns Protein kinases ATP-binding region signature. 348 370 IPR017441 GO:0005524
Gso10g2259 669 Gene3D Phosphorylase Kinase; domain 1 303 417 - -
Gso10g2259 669 ProSiteProfiles Protein kinase domain profile. 342 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2259 Gso-Chr10 49659741 49665209 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2259 6 669 Receptor kinase-like Gene Family AT4G21410 47.598 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso10g2259 PK_Tyr_Ser-Thr 8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2259 - - gmx:100796158 1278.08