LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso10g2257	ATGGGGATGGCACCTTCAAGACTGATTTCCCTTCTCTTTCTCCTTCTTACACTCATATCTTATACCACCGCTCAGCCAAGCTTCCTGTACCATTTCTGCACGAATGATAAAGGCAACTACACTGCAAACAGTTCCTACCAGACCAACCTCAATACCCTTTTGTCCACTTTGTCTTCTTCCAACACACAAATTGATTCTGGCTTCTACAATTTCTCCGAGGGCCAAAACTCTGACAAAGTTAACGCAATTGGGATGTGTAGAGGTGATGTTAAGCCAGATGCATGTCGTAGTTGCTTAAATGACTCAAGAGTCCTTCTCACACAACGTTGTCCAAACCAGAAAGAGGCCATTGGGTGGTATGACGATTGCATGCTACGCTACTCGAATCGCTCAATATTTGAGACAATGGAACCTAACCCTACTTACTTTCTGTGGACACAAAGCAATGCAACTGATATGGATCAGTTCAATGAGGCTCTTAGGGGCTTAGTGGATGGTCTCAGAAGCAAAGCTGCATCTGGTGATTCACTTAAGAAGTATGCTGCAGGAAGTGCAGCTGGTCCAAGCTTTCAAACTATATTTGCACTTCTACAATGCACACCTGATTTATCAGAACAACAGTGCAATAATTGCTTGGTTAGAGCTATAACAGATATCTCAAGTTGTTGTGCTGGCAGGACAAGTGGCAGAATTGGAAAACCAAGCTGCAATCTTAGGTTTGATACATCCCCTTTCTATGACTCTGCAGCTGATGCCTCTCCTCCGTTGTCGCCACCACAAGCGCCTTCTCCTCCTCCTCCTTCAGATACCAATACTGCTCCCTCTGAAGGAAAGAGCAACACAACACAAATTGTTGTTGCGGTAGTTGTGCCAACTGTTGTCATCCTTGTGCTGGTCATCTCCGTTTGCATTTTCCTAAGAGCAAGGAAGCAAAGGAAAAATGTTGACAATGACAATGAAATTGACGATGAAATTGAACCTACTGAGACACTGCAATTCAACTTTGACATCATAAGAATGGCTACAAATAACTTTTCTGAGACAAATATGCTAGGAAGAGGAGGATTCGGACCTGTTTACAAGGGTAAGCTTTCCAGGGGACAAGAAGTTGCTGTCAAAAGATTGTCTATGAATTCAGGACAAGGAGATGTAGAATTTAAAAATGAAGTGCAGTTAGTGGCCAAGCTTCAACACCGAAATTTAGTCAGACTACTTGGTTTTAGTTTGGAAAGAAAAGAAAGGTTACTGGTCTACGAGTTTGTTCCCAATAAAAGCCTTGATTACTTCATATTTGATCCAATTAAGCGTGCACATTTAGACTGGGAAAGGCGGTATAAAATCATAGGCGGCATTGCCAAAGGCCTTCTTTATCTTCATGAGGATTCGAGACTGAGGATTATTCATCGTGATCTTAAAGCAAGCAACATTCTCTTGGATGCTGAAATGAATCCTAAGATATCGGATTTTGGTATGGCAAGATTGTTTCTTGTGGATCAAACTCAAGGAAACACAAGTAAAATTGTTGGAACTTATGGATATATGGCACCCGAATATATAAGTCAAGGACAATTCTCTGTGAAGTCAGACGTTTTCAGTTTTGGTGTACTGGTTTTAGAGATAGTAAGTGGCCAGAAAAATAGTGGATTTCAACATGGAGACCATGTAGAGGATCTAATAAGCTTTGCCTGGAAAAACTGGAGGGAGGGAACAGCATCAAATCTCATAGACCCGACATTGAATACAGGTTCAAGAAACGAAATGATGAGATGCATCCACATTGGTTTACTGTGTGTTCAGGGAAATTTAGCTGACAGACCAACCATGGCTTCTGTTGCACTCATGCTTAATAGCTACTCTCACACAATGCCTGTGCCTTCAGAGCCTGCGTTTTTTATGCACAGCAGAGGCTTGTCAGATATTCAGTCGAGGGAGTATAATTCAGGGGCAACAGAATCAAAAAGCAAATCTGTCAAAGCATACTCAAGTGAGGAATCAACATGA	2001	0.4188	MGMAPSRLISLLFLLLTLISYTTAQPSFLYHFCTNDKGNYTANSSYQTNLNTLLSTLSSSNTQIDSGFYNFSEGQNSDKVNAIGMCRGDVKPDACRSCLNDSRVLLTQRCPNQKEAIGWYDDCMLRYSNRSIFETMEPNPTYFLWTQSNATDMDQFNEALRGLVDGLRSKAASGDSLKKYAAGSAAGPSFQTIFALLQCTPDLSEQQCNNCLVRAITDISSCCAGRTSGRIGKPSCNLRFDTSPFYDSAADASPPLSPPQAPSPPPPSDTNTAPSEGKSNTTQIVVAVVVPTVVILVLVISVCIFLRARKQRKNVDNDNEIDDEIEPTETLQFNFDIIRMATNNFSETNMLGRGGFGPVYKGKLSRGQEVAVKRLSMNSGQGDVEFKNEVQLVAKLQHRNLVRLLGFSLERKERLLVYEFVPNKSLDYFIFDPIKRAHLDWERRYKIIGGIAKGLLYLHEDSRLRIIHRDLKASNILLDAEMNPKISDFGMARLFLVDQTQGNTSKIVGTYGYMAPEYISQGQFSVKSDVFSFGVLVLEIVSGQKNSGFQHGDHVEDLISFAWKNWREGTASNLIDPTLNTGSRNEMMRCIHIGLLCVQGNLADRPTMASVALMLNSYSHTMPVPSEPAFFMHSRGLSDIQSREYNSGATESKSKSVKAYSSEEST*	667

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso10g2257	666	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	7	641	-	-
	Gso10g2257	666	Pfam	Salt stress response/antifungal	148	242	IPR002902	-
	Gso10g2257	666	Pfam	Salt stress response/antifungal	33	129	IPR002902	-
	Gso10g2257	666	MobiDBLite	consensus disorder prediction	644	666	-	-
	Gso10g2257	666	CDD	STKc_IRAK	351	616	-	-
	Gso10g2257	666	ProSiteProfiles	Protein kinase domain profile.	345	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso10g2257	666	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	466	478	IPR008271	GO:0004672\|GO:0006468
	Gso10g2257	666	SUPERFAMILY	Protein kinase-like (PK-like)	330	643	IPR011009	-
	Gso10g2257	666	MobiDBLite	consensus disorder prediction	255	271	-	-
	Gso10g2257	666	ProSiteProfiles	Gnk2-homologous domain profile.	138	245	IPR002902	-
	Gso10g2257	666	Gene3D	-	139	245	IPR038408	-
	Gso10g2257	666	Gene3D	-	25	131	IPR038408	-
	Gso10g2257	666	Gene3D	Transferase(Phosphotransferase) domain 1	421	625	-	-
	Gso10g2257	666	Pfam	Protein kinase domain	346	551	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso10g2257	666	SMART	serkin_6	345	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso10g2257	666	ProSiteProfiles	Gnk2-homologous domain profile.	28	132	IPR002902	-
	Gso10g2257	666	MobiDBLite	consensus disorder prediction	249	278	-	-
	Gso10g2257	666	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	7	641	-	-
	Gso10g2257	666	Gene3D	Phosphorylase Kinase; domain 1	319	420	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso10g2257	Gso-Chr10	49652403	49655767	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso10g2257	24	637	Receptor kinase-like Gene Family	AT4G38830	52.335	0.0	638

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gso10g2257		Pkinase	7.9e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso10g2257	-		-	gmx:102662291	1236.48