Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2241 ATGTATAACAAAAGTCAGAACACAAAATTCGATTCTCAACAACAACAGCAGCAGCAACAACCGCAGCAGCAACAACCGCAGAATTTGATGGAGATGTCAACACAGAGGACATCCTCGGAAGGAAGGAACCGAGACGATCAGGAACCTGCTGCGGGAAACGAAGTCACCATGGAAGCTCCTCCTTCGGGTGACGAGGACCAAGATCCCGATGAGGGGTTCAAAAGGAGGCGCCACACCCGCCACACACTGCACCAAATTTCAGAGATGGAAGCTTTCTTCAAGGAGTGCCCTCACCCTGATGAGAAGCAAAGGAAAGCGCTTGGCCGCGAGCTCGGGTTGGTGCCTTTGCAAATCAAGTTTTGGTTTCAAAACAAGCGCACTCAAGTGAAGTCTCAACAAGAGAGATACGAAAACAACCTTCTGAGGGTTGAGAATGACAAGCTTCGAGCAGAGAACAGTAGGTACAGGAATGCACTATCGAATACTTCATGCCCTAACTGTGGAGCCCCTACTACTCTTGGAGAAATGTCCTTTGACGAGCAGCAGTTGAGGATGGAGAATGCGCGACAAAAAGAGGAGATTGATAGCATGTCAGGACTTGCAGCCAAGTATGCAGCTGGAAAATCTGCGAGCAATTCGTACTATAACATGCCATCTAATCAAAACCAGATGCCTTCGCGCTCGCTTGACCTGGGAGTTGTTAACAACAACAGCAGCATCAACAACAACAACAGCAGCATCAACAACAGCAACAACAAGAACAACAACAACAACAACTATGTTGTACAAGCGCAACCTGTAGCCATGGTTGGGGAAATGTATGGTGGAAATGACCCTCTTAGGGAACTCCCACTTCTTTCTAGTTTTGACAAAGATTTAATTTCGGAGATTGGTCTCGTGGCAGTAGAGGAAATCAATCAGTTGACTCTGTCTGCAGATCCTTTGTGGGTCCCAGGCAATTACGGAAGTGAAGTTATAAATGAAGATGAATACCTGAGGCATTTCCCTAGGGGAATAGGTCCAACACTCTTGGGCGCAAGAACCGAATCATCTCGGCAAACCGCTATAGTAATGATGCATCATATGAAACTCGTTGAGATGCTTATGGATGTGAATCAATGGTCAAATATGTTTTGCGGCATCGTTTCAAGGGCAGTGACACACGAAGTGCTGTCAATTGGAGACCATGCAAGATACGATGGAGCCTACCAAGTGATGTCAGCTGAGTTTCAGGTTCCTTCACCCCTTGTTCCTACTCGCGACAACTATTTCATCAGGTTCAGTAAGAAGCACGCAGGACAATCATGGGCGGTGGTTGATATTTCAATGGATCATCTGCGACCTGGTGCAGTCACAAGAACCCGAAGACGACCCTCTGGTTGCATAATTCAAGAATTGCCAAATGGTTACTCAAAGGTCATATGGGTTGAACATGTCGAAGTTGACGACATCGAGGTGCATAATCTTTACAAAAATTTGGTTAACTCTACCCTTGCGTTTGGAGCTAAACGTTGGGTTGCAGCAATAGAAAGAACATGCGAACATCTTGCTAGGGCAATGGCCACCAACATACCCCAAGGGGCACTTTGTGTGATAACAAGTCACGAGGGTCGGAAAAGTATGATGAAGCTGGCCGAAAGAATGGTATTGAGCTTTTCTACTGGTGTGGGTGCTTCCACTGCAAACGCTTGGACACCACTACCACTTGATCTTGAAAATGTTAGGGTCATGACCAGAAAGAGCGTGGATGATCCAGGCAGACCTTCCGGTGTAGTGCTCAGTGCTGCAACTTCTCTCTGGCTCCCAGTTCCTGCAAGGAGAGTTTTTGACTTTCTCAGATCCGAAAACACTAGAAATCAGTGGGATATTCTGTCGAGCGGGGCTCAAGTGAACGAGCTTGCACATATTGCTAAAGGGAGAGACCATGGAAATTCTGTCTCTCTTCTTCGAGTGAATACTCAGAATGTGGCCCAGAACAATATGCTGATACTTCAAGAGAGTTGCATTGATGCTACAGGCTCATTTGTGGTTTATGCTCCTATTGATTTAGCTTCCATGAATCTTGTGTTGGGTGGTGGTAATCCGGATTACGTGGCCCTGCTCCCTTCGGGCTTTGCTGTTCTTCCTGATGGGCCTGCATTGAACGTAGTGCCCGGGCCCGTATGTGAGGTTGTTGGATCTGGACGAGGTTGTCTTCTTACGGTTGCATTTCAGATACTGGTGGATTCTACACCAACGGCAAAACTCTCTGTTGGTTCAGTGACAACCGTTAACAATTTGATAAAGAGAACCGTGGAAAGGATCAAAGATTCAGTCACGCTTGACGGCGCCTAA 2334 0.4683 MYNKSQNTKFDSQQQQQQQQPQQQQPQNLMEMSTQRTSSEGRNRDDQEPAAGNEVTMEAPPSGDEDQDPDEGFKRRRHTRHTLHQISEMEAFFKECPHPDEKQRKALGRELGLVPLQIKFWFQNKRTQVKSQQERYENNLLRVENDKLRAENSRYRNALSNTSCPNCGAPTTLGEMSFDEQQLRMENARQKEEIDSMSGLAAKYAAGKSASNSYYNMPSNQNQMPSRSLDLGVVNNNSSINNNNSSINNSNNKNNNNNNYVVQAQPVAMVGEMYGGNDPLRELPLLSSFDKDLISEIGLVAVEEINQLTLSADPLWVPGNYGSEVINEDEYLRHFPRGIGPTLLGARTESSRQTAIVMMHHMKLVEMLMDVNQWSNMFCGIVSRAVTHEVLSIGDHARYDGAYQVMSAEFQVPSPLVPTRDNYFIRFSKKHAGQSWAVVDISMDHLRPGAVTRTRRRPSGCIIQELPNGYSKVIWVEHVEVDDIEVHNLYKNLVNSTLAFGAKRWVAAIERTCEHLARAMATNIPQGALCVITSHEGRKSMMKLAERMVLSFSTGVGASTANAWTPLPLDLENVRVMTRKSVDDPGRPSGVVLSAATSLWLPVPARRVFDFLRSENTRNQWDILSSGAQVNELAHIAKGRDHGNSVSLLRVNTQNVAQNNMLILQESCIDATGSFVVYAPIDLASMNLVLGGGNPDYVALLPSGFAVLPDGPALNVVPGPVCEVVGSGRGCLLTVAFQILVDSTPTAKLSVGSVTTVNNLIKRTVERIKDSVTLDGA* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2241 777 CDD homeodomain 75 133 IPR001356 GO:0003677
Gso10g2241 777 Gene3D - 62 144 - -
Gso10g2241 777 ProSiteProfiles 'Homeobox' domain profile. 72 132 IPR001356 GO:0003677
Gso10g2241 777 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 41 774 - -
Gso10g2241 777 SUPERFAMILY Bet v1-like 350 516 - -
Gso10g2241 777 SUPERFAMILY Bet v1-like 536 769 - -
Gso10g2241 777 MobiDBLite consensus disorder prediction 1 37 - -
Gso10g2241 777 SMART START_1 296 515 IPR002913 GO:0008289
Gso10g2241 777 Pfam Homeodomain 75 130 IPR001356 GO:0003677
Gso10g2241 777 Coils Coil 126 158 - -
Gso10g2241 777 ProSiteProfiles START domain profile. 287 518 IPR002913 GO:0008289
Gso10g2241 777 Gene3D - 354 521 IPR023393 -
Gso10g2241 777 SUPERFAMILY Homeodomain-like 68 138 IPR009057 -
Gso10g2241 777 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 41 774 IPR042160 -
Gso10g2241 777 Pfam START domain 302 514 IPR002913 GO:0008289
Gso10g2241 777 MobiDBLite consensus disorder prediction 1 73 - -
Gso10g2241 777 SMART HOX_1 74 136 IPR001356 GO:0003677
Gso10g2241 777 CDD START_ArGLABRA2_like 291 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2241 Gso-Chr10 49515695 49521683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2241 41 777 Homeobox Transcription Factor Family AT4G21750 59.499 0.0 907
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso10g2241 START 5.4e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2241 K09338 - gmx:100787891 1463.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1136 20 41115471 41121678 Gso10g2241 10 49515695 49521683 GST
Gso1g2050 1 56891672 56898886 Gso10g2241 10 49515695 49521683 PCT
Gso11g0031 11 239685 247110 Gso10g2241 10 49515695 49521683 PCT
Gso10g2241 10 49515695 49521683 Gso1g2050 1 56891672 56898886 PCT
Gso10g2241 10 49515695 49521683 Gso11g0031 11 239685 247110 PCT