Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2240 ATGAGTGAATATGCAGTTGCTAGCTGGTTATTTGAGAGAGACTATCCTCATCCGGCTGTTGATTTAGGAGTAGCCAAAGCATTAGGTAGACATGTGGAGGTTAGTGAATGGCAACGAAAACGAAAACAATTTCCAGCTTCTATCACACACAGCTTTATCAATGGACAGCAGCATCAAAGTCCAAGAGCTTTAATTGAGGCATATGGTAGTGACAAAAGCCAACAAACTTCAAGCAGCAAGTCTTTGTTAGTTGAACCACTGGATATAAATGGTATAGACAACATGTCAACTTCATTGCAGAATACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACCTTATTGTCTTCAACTATTGGTTTCTCCAGGGAAAGGCCTGTTGTTCCAGCTAATGCAACTTTGTCAGAGCAAGATGCCAGCAAGGGATGGGGTATTAGAGATTTTCGTCATGCACCATTGGGTGAGGTACCTAGATTCCAAAATCAAATCAATTATAGTCTAGGCTCTTCTCAACCTCATGATCCTTCGAAGATTTCTCTTCATCTGTCTAACTCATCACAACATAACTTTAATAATAGGGGGCGAGCAAGGAGTCTCACGATCCCTCCTGTTGATAACATTCGAAATACTGATATAAACCCATATCTGGTTCGACCTACATCTTTTGAAATAAGGCCTTCTACAAATTTGAATGTCACTCGACCTCCTACCTTAAATCCAATAACTCCATTGCAAAAACGTGTTAGGAATCAGTTTGAAGCTACACATACTAGTGACCCTATTGTGAACCATGTAAATAAATCTTCGTTTATGCCAGAACAGTCATTTGACCGTATTGAGAACAAGGATGCAAGTATTTCTAAGATACATCAGTTGCCTAATCAGCATCCCGGACTAATTTCATCCAACCAGCAAAATCACGGGCAAGCACCACAGCTGCAGTTTTTTCCATCTCAGGATCCAACGCCCTCTCAATTTAGTCCTGGGAGTTCATTGCAGCTACATGATGCTTCTATTAGTACAGCCATGTCAAATCCGTTACATGGTATACAATTCCCTTCACCAGTCCAAAGCTTTGCAAATAACCCTTTCATTAGATATACTAGTTTAATTAGTTCTCTAATGTCTCAAGGCGTGATCTCATTGGCTAACCAGCTGCCTGCACAGGATTCTATTGGAACTGAGTTTAATCCAGATATTCTGAAGGTTCGTCACGAGTCTCCAGCAAACGCCTTGTATCGTGATCTCCCTAGACAATGCAAAACTTGTGGGCTCCGATTCAGATGCCAAGAGAAACACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGTCTAAAAGCTGTAAGCAGAAGCCCTCTCGCAAGTGGTTTGCGAGTCTTAAGCTGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAATCAGTTCCACATTTTTTGGCAACAGAAAGCATAGATTATGAAGAAAGGAAAGATCATGAAGAGTTTGCAGTGCCAACAGAAGAGGACCAGAGTACATGTGGGTTATGTGGAGAGTCTTTTGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGCATACCTCAATGCACCCGCTAGAAAAACATCAGCAGGCATGGATAGGTCACAGTTAGGCCCCATAATTCATGCTAAATGCAGATCAGACTCTAATCTGCAGTGTGCCAATGAAGAGGATACTCGAAGGAAACGAATGCGGAGTTGA 1746 0.4187 MSEYAVASWLFERDYPHPAVDLGVAKALGRHVEVSEWQRKRKQFPASITHSFINGQQHQSPRALIEAYGSDKSQQTSSSKSLLVEPLDINGIDNMSTSLQNTEEEEFDWEDMSPTLLSSTIGFSRERPVVPANATLSEQDASKGWGIRDFRHAPLGEVPRFQNQINYSLGSSQPHDPSKISLHLSNSSQHNFNNRGRARSLTIPPVDNIRNTDINPYLVRPTSFEIRPSTNLNVTRPPTLNPITPLQKRVRNQFEATHTSDPIVNHVNKSSFMPEQSFDRIENKDASISKIHQLPNQHPGLISSNQQNHGQAPQLQFFPSQDPTPSQFSPGSSLQLHDASISTAMSNPLHGIQFPSPVQSFANNPFIRYTSLISSLMSQGVISLANQLPAQDSIGTEFNPDILKVRHESPANALYRDLPRQCKTCGLRFRCQEKHSSHMDWHVTKNRMSKSCKQKPSRKWFASLKLWLSGAEALGTESVPHFLATESIDYEERKDHEEFAVPTEEDQSTCGLCGESFDEFYSDEMEEWMYRGAAYLNAPARKTSAGMDRSQLGPIIHAKCRSDSNLQCANEEDTRRKRMRS* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2240 581 ProSitePatterns Zinc finger C2H2 type domain signature. 422 442 IPR013087 -
Gso10g2240 581 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 40 565 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Gso10g2240 581 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 40 565 - -
Gso10g2240 581 MobiDBLite consensus disorder prediction 295 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2240 Gso-Chr10 49503101 49506204 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2240 19 581 C2H2 Transcription Factor Family AT4G04885 40.210 2.68e-108 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2240 K14400 - gmx:102662711 1171.76