Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2239 ATGTTTTCACAAAACATGATTCTCCCTCCCGAAAACCCTAGACCCGCGGGGTTCGCTTCCAAACCCATGGGCAATGAGATCGCGAAGCCTCCGCCGTCGATTCTCGTTGGCCGCTTCAAGGCTCTCCTCAAGCAGCGCGACGATGAACTCCGAGCCACATCCGTCCCCGTCCCGCCGCCGTCCACCGACGAAATCGTCCAGATTTACGAACTCCTGCTGTCGGAACTCACGTGCAATTTGAAACCCATCATCACCGATCTCACAATTATCGCCGAACAGCAGAGGGAGCACGCCAAAGGTATCGCTGACGCAATCTGCGCTCGGATTCTCGAGGTTCCAGTAGATCAAAAGCTTCCTTCACTCTATCTGTTGGACAGTATTGTGAAGAATTTTGGGCAGGAATACATTAGATACTTCTCTTTACGTCTTCCTGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGCCTAGTTTGCATTCTGCAATGCGCCATCTTTTTGGTACTTGGTCAAAAGTCTTTCCACCTTCAGTCCTGCACAAGATTGAAGCTGAGTTGCAATTTTCTCAAGCAGTTAATACTCAATCATCCACCCCGAATCCTGTCAGGGCTTCTGAATCATCTCGACCAAGTCATGGCATACATGTTAATCCAAAATACTTGCGGCAGTTGGAGCGCTCTACTGTGGATAGTGCTAGTAAGACACATCAATTTTTATCAAGCAGTAGCAGGCTTGGAATATCCTCGTCGTCCCCTTTAAGAATTGGAGTTGATAGGCCTTTGTCTGCATCTATAGATGAATATGCAGTGGACAATCCTGGTGTTGATTATGGAGTAGCCAAAGCATTAGGTAGAGATGTGGATTTGACTGAATGGCAGCGAAAGCTGTATTCTGGTGATGGTCGTAATCGATTTCCAACTTCTTTTACGTACAGCCTTAGTAATGGACATCAGCGTCAAAGTTCAAGAGCTTTAATTGATGCATATGGCAGTGACAAAAGTCAAGAAACTTCAAACAGTAAGTCTTTGTTAGTTGAACGTCTGGATAGAAATGGTATAGACAAAGTGTTATCAACATCATGGCAGAATACTGAAGAGGAGGAGTTTGACTGGGAAAATATGAGTCCGACCTTAATAGACCATAGTAGGAATAACAGTTTATTGCCTTCAACTTTTGGTTTCTCTAGGGAAAGGCCTGGCGTTGCAGCTAATGCAACTTTGTCAGAGCAAGATACTAGGAAGGGGTGGTCTAGTGGATCTCAGCTTCCTCCAGTAGATGATTCTTCTGCCATAGCAGAAGATGCATTTGCCTCTTCAACTTTTTGTCGTGCACCCCCAGGTCAGGTACCTGGATCCCAAAATCAAATCAATCATAGCCTGGGCTCCTCTCAACCTCATGATGCTTGGAAGATTTCTCATCATCCGTCTAACATTTTTAGTAATAGGGGGCGGGCAAGGAATCTTATGATCCCTCCAATTGACAACATTCGCAATACAGATAATAACCCATATTGGGTTCGACCTGCAGTGTCGAGGATGGAAGCTCACCCATCAGTTTTGCCAGCACCTTTTGAAATGAGGCCTTCTGTAAATGTGAATGTCACTCGGCCACCCATCATAAATCCGTTGCAAAAACATGTTAGGAGTCAGTTTGATGCCATGAATACTAGTAATCCTATTGCGAACCATGTTGTAAATAAATCTTCATTTATGCCAGAACAGTCATTTGACAGTGTTGAGAACAAGGATGCAAGTATTTTAAAGATACATCAGTTGCCTAATCAGCTTTCTGGAGTAATTTCGTCCAACCAGCAAAATCATGGGCAGGCACAACAACTACAGTTTTTTCCTTCTCAGGATCCATCAACCTCACAATTTAGTCATGGGAGTTCATTGCAGGGACATGGTGTTTCTATAAGTACAGCCATGTCAAATCCATTACCAGTTCTACCATTCCCTTTACCATTTCAAAGTATTTCAAATAACCCTTTACATTTACAGGGTGGAGCCCATCCACCTTTACCTCCTGGTCGCCCTCCTGCTCCATCTCAAATGATACCCCATCCAAATGCTGGTGCATTTATGCCAAGCCAACAGCCAACTGTTGGATATACTAATTTAATTAGTTCTCTAATGTCTCAAGGCGTGATCTCATTGGCTAACCAGCTGCCTGCACAGGATTCTGTTGGAACTGAGTTTAATCCAGATATTCTGAAGATTCGTCATGAGTCTGCAGTCAATGCCTTATATGGTGATCTCCCTAGACAATGCACAACTTGTGCGCTCCGATTCAAATGCCAAGAGGAACACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGTCTAAAAGCCGTAAGCAGAAACCCTCTCGTAAGTGGTTTGTTAGTGACCGGATGTGGCTCAGTGGTGCAGAGGCATTAGGAACAGAATCAGCTCCAGGTTTTTTGCCTACCGAAACCATAGAAGAAATGAAAGATCATGAGGAGTTGGCAGTGCCGGCAGAAGAAGACCAGAATACATGTGCATTATGCGGAGAGCCTTTTGATGAGTTTTACAGTGATGAAATGGAGGAATGGATGTATAGAGGAGCTGTATACCTCAATGCACCTTTAGGAATAACAGCAGGCATGGATAGGTCACAGTTAGGCCCCATAATTCATGCTAAATGCAGATCAGAATCTAATATGGCCACCTCTGAAGATCTTGGGCTGGATGAAAAGGGTGCCGATGAAGAGGGTTCCCAAAGGAAACGAATGCGGAGTTGA 2769 0.4456 MFSQNMILPPENPRPAGFASKPMGNEIAKPPPSILVGRFKALLKQRDDELRATSVPVPPPSTDEIVQIYELLLSELTCNLKPIITDLTIIAEQQREHAKGIADAICARILEVPVDQKLPSLYLLDSIVKNFGQEYIRYFSLRLPEVFCEAYRQVQPSLHSAMRHLFGTWSKVFPPSVLHKIEAELQFSQAVNTQSSTPNPVRASESSRPSHGIHVNPKYLRQLERSTVDSASKTHQFLSSSSRLGISSSSPLRIGVDRPLSASIDEYAVDNPGVDYGVAKALGRDVDLTEWQRKLYSGDGRNRFPTSFTYSLSNGHQRQSSRALIDAYGSDKSQETSNSKSLLVERLDRNGIDKVLSTSWQNTEEEEFDWENMSPTLIDHSRNNSLLPSTFGFSRERPGVAANATLSEQDTRKGWSSGSQLPPVDDSSAIAEDAFASSTFCRAPPGQVPGSQNQINHSLGSSQPHDAWKISHHPSNIFSNRGRARNLMIPPIDNIRNTDNNPYWVRPAVSRMEAHPSVLPAPFEMRPSVNVNVTRPPIINPLQKHVRSQFDAMNTSNPIANHVVNKSSFMPEQSFDSVENKDASILKIHQLPNQLSGVISSNQQNHGQAQQLQFFPSQDPSTSQFSHGSSLQGHGVSISTAMSNPLPVLPFPLPFQSISNNPLHLQGGAHPPLPPGRPPAPSQMIPHPNAGAFMPSQQPTVGYTNLISSLMSQGVISLANQLPAQDSVGTEFNPDILKIRHESAVNALYGDLPRQCTTCALRFKCQEEHSSHMDWHVTKNRMSKSRKQKPSRKWFVSDRMWLSGAEALGTESAPGFLPTETIEEMKDHEELAVPAEEDQNTCALCGEPFDEFYSDEMEEWMYRGAVYLNAPLGITAGMDRSQLGPIIHAKCRSESNMATSEDLGLDEKGADEEGSQRKRMRS* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2239 922 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 33 897 - -
Gso10g2239 922 MobiDBLite consensus disorder prediction 192 211 - -
Gso10g2239 922 MobiDBLite consensus disorder prediction 893 922 - -
Gso10g2239 922 MobiDBLite consensus disorder prediction 616 636 - -
Gso10g2239 922 ProSitePatterns Zinc finger C2H2 type domain signature. 756 776 IPR013087 -
Gso10g2239 922 ProSiteProfiles CID domain profile. 61 189 IPR006569 -
Gso10g2239 922 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 33 897 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Gso10g2239 922 SUPERFAMILY ENTH/VHS domain 60 188 IPR008942 -
Gso10g2239 922 Pfam CID domain 80 180 IPR006569 -
Gso10g2239 922 CDD CID_Pcf11 69 185 - -
Gso10g2239 922 SMART 558neu5 64 186 IPR006569 -
Gso10g2239 922 Gene3D - 59 187 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2239 Gso-Chr10 49494960 49501613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2239 696 922 C2H2 Transcription Factor Family AT4G04885 67.841 6.02e-100 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2239 K14400 - gmx:100787354 1821.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1138 20 41146536 41153240 Gso10g2239 10 49494960 49501613 GST