Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2233 ATGGAGAATGAGCGCCACGCCAAGACGCTCATCTGTGCCCTCAACCTTCTCTCGCGAGACCTACCTCTCCCTCCTCACATCCTCAATTCCGTCTCTTCCATCTACCGCAACAATCATGGCGATGGAGGGAATTCTGGAGAGGATTTGATGACAGATCTTGAAGATGCACTGTCCAAGCAGCGCCCGAATTGTGTGCCTGGTTTCAAATTGGAGAAATCAAGGGATAGTCGGTATCGGAGTCTGATTCAGCATCGGTTAAATGAGCTTCAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCTTGCTTGAACTTTATGGACTAAAGCTGGCAGAGTTGCAGATGAAGGTTCGGTCTGATGTGAGTTCTGAATACTGGCTCAATGCTAAGTGTGCATATCCTGACAGGCAATTGTTTGATTGGGGCATGATGAGGTTGCGCCGTCCATTGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAATTAAAGAAGAAACGGGAGGCTGAGAGACTGTCAAGATTAGAAGAAAAGGAGAAAAATCATATAGAGACTAGAACAAGAAAATTCTTTGCAGAAATACTCAATACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTGTGAAGAGGAGAAAACAAAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGGCAACGGGCAACTCGGGCAGAGAAATTGAGATTCCAAGCATTGAAGGCTGATGATCAAGAAGCCTACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGATTAACTTTGCTTCTTGAAGAAACAAATAAACTACTAGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAACAAATATTCAAATGGCATTGAAGCCTTGGAAGATTCCGAAGCTGATTTACTGGAGTCAGATGCTTTAAAGAATGGAGTTTCTAAGGAATCACCTCTTGATGAAGATATAGATATGATAGATTCTGATCATAATGGTGATTCTAGTGATTTACTTGAAGGTCAGCGGCAATACAACTCTGCCATACATTCTATTCAAGAAAAGGTAACTGAGCAACCGTCTATGCTTCAAGGTGGAGAATTAAGACCATACCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGACTCGGGAAGACAATACAAACAATTTCGCTGATAGCACATCTTATGGAACACAAGGGTGTTACTGGTCCTCACTTGATTGTTGCTCCAAAGGCTGTTCTACCAAATTGGGTCAATGAATTCACAACATGGGCTCCTAGCATCACAGCTATTCTTTATGATGGACGGCTGGATGAGAGGAAAGCAATGAAGGAAGAGTTGTCAGGGGAGGGGAAATTTAATGTTCTATTAACGCACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCAATGGAAATACTTGATTGTGGATGAAGGGCATCGGTTGAAAAATCACGAGTCTGCTCTGGCAAGAACCTTGGACAATGGATATCGCATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAAAATTTTGAGGACTGGTTTAACGCCCCCTTTGCAGACCGAGTTGATGTCTCTCTCACAGATGAGGAACAACTATTGATCATCCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAAGATGAGGTGGAAAAATTCCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTGGACAATGGTTCTGGAAAATCAAAAAGTCTGCAAAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTATCTCTTTGTGGGAGATTATGATATGTATAGACGTAAGGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTAGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTTATGGACACTCTCGAAGTCTATTTGCGACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGCAATCTTCTACGAAAATTTAATGCTCCTGACTCCCCGTACTTCATGTTTCTTTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAATTTACAAACAGCAGATACTGTTATAATCTTTGATAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGACCGAGCCCATCGCATTGGACAAAAAAAGGAGGTCAGGGTTTTTGTGTTGGTTAGTGTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAGGCAGGACTTTTCAACACTACTTCAACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGTAGAGGTACAAGCTCACTTGGGACAGATGTGCCTAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGAAGACAAAAGGAAAATTACAGATCTCGTCTCATGGAAGAGCATGAATTGCCAGATTGGGTGTATTCTCCAATGAACAAGGATGATAAGGCCAAAGATTTCAACAGTGGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTGCAATGGATGAAGGCTGTGGAGAATGGGGAAGACATATCAAAGTTTTCAGGTAAAGGAAAAAGGAGAGACCACCGCTCATCTGACAGCGTTGCACAAGCCAGTGATAATACAGGAGCAGAAGAAAGTTTAGAGTTGAGGACTGAAAGTGTTCCCATGGAAAATGAGCGAACTAGTGAAGATAGTTTCCATGTGACCCCTCCCGCAAAGAGATTCAAGCCTGAAGGAACAAATTTCCTGAAACATACATACGAGGATGTTGGAAGTGGTTTGAATCGCCATTTGTTATCATGGAATACTCACAAAAAGAAAAGGTCAAGTTTTCTTGGCCAAGGTTCATTATCTGATACTAGAGGGCATTCTTCAAATGGAAGAGCAAACTGGAACTGA 3219 0.4194 MENERHAKTLICALNLLSRDLPLPPHILNSVSSIYRNNHGDGGNSGEDLMTDLEDALSKQRPNCVPGFKLEKSRDSRYRSLIQHRLNELQELPSSRGEDLQTKCLLELYGLKLAELQMKVRSDVSSEYWLNAKCAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLKKKREAERLSRLEEKEKNHIETRTRKFFAEILNTVREFQLQIQASVKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDNKYSNGIEALEDSEADLLESDALKNGVSKESPLDEDIDMIDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEHKGVTGPHLIVAPKAVLPNWVNEFTTWAPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIQWKYLIVDEGHRLKNHESALARTLDNGYRIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGDYDMYRRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDTLEVYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPMNKDDKAKDFNSGVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSGKGKRRDHRSSDSVAQASDNTGAEESLELRTESVPMENERTSEDSFHVTPPAKRFKPEGTNFLKHTYEDVGSGLNRHLLSWNTHKKKRSSFLGQGSLSDTRGHSSNGRANWN* 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2233 1072 SMART SnAC_2 887 947 IPR029295 GO:0042393
Gso10g2233 1072 MobiDBLite consensus disorder prediction 957 973 - -
Gso10g2233 1072 Pfam Snf2-ATP coupling, chromatin remodelling complex 888 947 IPR029295 GO:0042393
Gso10g2233 1072 Coils Coil 170 190 - -
Gso10g2233 1072 PANTHER ATP-DEPENDENT HELICASE BRM 45 1000 - -
Gso10g2233 1072 Pfam Helicase conserved C-terminal domain 681 794 IPR001650 -
Gso10g2233 1072 MobiDBLite consensus disorder prediction 990 1011 - -
Gso10g2233 1072 MobiDBLite consensus disorder prediction 317 339 - -
Gso10g2233 1072 Pfam SNF2-related domain 373 661 IPR000330 GO:0005524|GO:0140658
Gso10g2233 1072 MobiDBLite consensus disorder prediction 1045 1072 - -
Gso10g2233 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 346 595 IPR027417 -
Gso10g2233 1072 Gene3D - 601 901 IPR027417 -
Gso10g2233 1072 MobiDBLite consensus disorder prediction 314 339 - -
Gso10g2233 1072 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 382 548 IPR014001 -
Gso10g2233 1072 SMART helicmild6 710 794 IPR001650 -
Gso10g2233 1072 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 684 851 IPR001650 -
Gso10g2233 1072 PANTHER SNF2/RAD54 HELICASE FAMILY 45 1000 - -
Gso10g2233 1072 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 848 IPR027417 -
Gso10g2233 1072 SMART ultradead3 366 559 IPR014001 -
Gso10g2233 1072 MobiDBLite consensus disorder prediction 957 1018 - -
Gso10g2233 1072 Gene3D - 340 594 IPR038718 -
Gso10g2233 1072 Coils Coil 885 905 - -
Gso10g2233 1072 CDD SF2_C_SNF 672 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2233 Gso-Chr10 49419467 49429456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2233 677 822 RAD5 or RAD16-like Gene Family AT5G43530 36.667 1.24e-20 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso10g2233 SNF2_N 2.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2233 - - gmx:100786280 2120.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1145 20 41220648 41233050 Gso10g2233 10 49419467 49429456 GST