Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2230 ATGGAGCTTCAGAGGCGCCAAGATCAGAGCCTCTCCCAGCGGAAGGGCCAGAAGCGGAAGCTCGACGAGGAGCAGCACCACGAGGACCGCCAGATCTCGCCGGCCCCTCCCACCGCCGACGAGCGCGCCGCCCTCCTCTCCGACGTCGCCGAACAGGTGAGCATCCTCGAGTCGACTTTCACGTGGAACGAAGCGGACCGATCCGCGGCCAAGCGCGCCACTCACGCGCTCGCCGATCTCGCGAAGAATGAGGATGTGGTGAACTTGATTGTTGAAGGAGGCGCGATTCCGGCTTTGGTGAAGCATCTTCAGGCGCCGCCTCTCAGTGACCGTGTCCAGAATCCGTTGCCGTTCGAGCACGAGGTTGAGAAAGGGAGCGCTTTCACACTAGGACTTCTTGCCGTCAAGCCAGAACATCAGCAGTTCATTGTTGACAGTGGTGCCTTAACACATCTTGTTGATCTTTTGAAGAGGCACAGGAATGGCTTAACTTCTCGTGCTATTAATAGTCTCATTCGTAGGGCCGCAGATGCTATTACTAATCTTGCTCATGAGAACAGCAGCATTAAAACCCGTGTCAGGATGGAGGGTGGAATTCCACCACTTGTTCATTTGCTTGATTTTGCTGATGCAAAGGTGCAACGAGCAGCTGCTGGTGCTCTGCGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTTTGATTCTAATGCTACGTTCTGAAGATGCTGGTGTTCATTATGAAGCGGTCGGTGTGATTGGTAATTTAGTCCACTCTTCCCCTAATATAAAGAAAGAAGTTCTTCTCGCTGGAGCTTTACAACCGGTTATTGGATTACTTAGTTCCTGCTGCTCTGAAAGCCAGAGAGAAGCAGCATTGTTACTTGGACAATTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCAACCTTTGATAGAGATGCTTCAGTCTCCTGATGTACAGCTCAGGGAAATGTCTGCTTTTGCATTGGGGAGATTGGCCCAGGACCCACATAACCAGGCTGGTATTGCACACAATGGTGGCTTAGTGCCGCTGCTCAAGCTTCTTGACTCAAAAAATGGCTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGCGTCTGATTTCATAAGGGTAGGTGGAGTTCAGAGACTGCAGGATGGAGAATTTATTGTTCAAGCAACTAAAGATTGTGTTGCCAAAACATTGAAAAGATTAGAGGAGAAGATTCATGGCCGTGTGCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAAAAGGGTTGTCAAAGACGAGTTGCTTTGGCTCTTGCACATCTTTGCTCTTCAGATGATCAGAGAATAATTTTTATTGATCACTATGGTCTTGAGTTGCTTATTGGGCTTCTTGGCTCATCTAGCTCTAAGCAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCGGATAAAGCCTCGACCTTGTCTCCTGTGGATGCTGCTCCTCCTTCTCCAACACCACAGGTCTATTTAGGAGAGCAGTACGTAAACAATGCTACGTTGTCTGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGAATTTGTCTTCTTGCATCATCAGATGCATTTCGTGCAATGTTTGATGGTGGTTACAGGGAGAAGGAGGCAAGGGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAGTTGATGATGAGATTTGTATATTGTGGATCAGTTGATGTCACTCTGGATATTGCTCAAGATCTTCTTCGAGCAGCCGATCAATATCTTTTGGAAGGACTTAAGAGACTCTGTGAGTACACAATTGCACAGGATATATCGCTAGAGAATGTGTCAAGTATGTATGAACTTACAGAAGCCTTCAACGCAATATCATTGAGGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGATAAATTGAGTTCAAGGCCAGGGCACTCTCTTCTGATTCAGCGCATAACACCAGAGATCCGTAATTACTTCGTTAAAGCTCTTACAAAGGCCAACTCTCAAAACGACCGACTCTAG 2124 0.4637 MELQRRQDQSLSQRKGQKRKLDEEQHHEDRQISPAPPTADERAALLSDVAEQVSILESTFTWNEADRSAAKRATHALADLAKNEDVVNLIVEGGAIPALVKHLQAPPLSDRVQNPLPFEHEVEKGSAFTLGLLAVKPEHQQFIVDSGALTHLVDLLKRHRNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAGVHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVQPLIEMLQSPDVQLREMSAFALGRLAQDPHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNASDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKGCQRRVALALAHLCSSDDQRIIFIDHYGLELLIGLLGSSSSKQQLDGAVALCKLADKASTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFVYCGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLENVSSMYELTEAFNAISLRHACILFILEQFDKLSSRPGHSLLIQRITPEIRNYFVKALTKANSQNDRL* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2230 707 MobiDBLite consensus disorder prediction 1 35 - -
Gso10g2230 707 CDD BTB_POZ_ARIA_plant 527 642 - -
Gso10g2230 707 Gene3D - 352 412 IPR011989 -
Gso10g2230 707 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 703 - -
Gso10g2230 707 Gene3D - 416 523 IPR011989 -
Gso10g2230 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 365 IPR000225 GO:0005515
Gso10g2230 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 232 IPR000225 GO:0005515
Gso10g2230 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Gso10g2230 707 MobiDBLite consensus disorder prediction 1 38 - -
Gso10g2230 707 Pfam BTB/POZ domain 533 635 IPR000210 GO:0005515
Gso10g2230 707 Gene3D Potassium Channel Kv1.1; Chain A 524 666 IPR011333 -
Gso10g2230 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 147 197 IPR000225 GO:0005515
Gso10g2230 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 94 148 IPR000225 GO:0005515
Gso10g2230 707 SUPERFAMILY ARM repeat 61 412 IPR016024 -
Gso10g2230 707 Pfam Armadillo/beta-catenin-like repeat 193 225 IPR000225 GO:0005515
Gso10g2230 707 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Gso10g2230 707 Pfam Armadillo/beta-catenin-like repeat 312 351 IPR000225 GO:0005515
Gso10g2230 707 SMART BTB_4 540 637 IPR000210 GO:0005515
Gso10g2230 707 ProSiteProfiles BTB domain profile. 540 607 IPR000210 GO:0005515
Gso10g2230 707 SUPERFAMILY POZ domain 532 634 IPR011333 -
Gso10g2230 707 SMART arm_5 468 508 IPR000225 GO:0005515
Gso10g2230 707 SMART arm_5 270 310 IPR000225 GO:0005515
Gso10g2230 707 SMART arm_5 353 393 IPR000225 GO:0005515
Gso10g2230 707 SMART arm_5 312 352 IPR000225 GO:0005515
Gso10g2230 707 SMART arm_5 136 184 IPR000225 GO:0005515
Gso10g2230 707 SMART arm_5 186 226 IPR000225 GO:0005515
Gso10g2230 707 SMART arm_5 83 135 IPR000225 GO:0005515
Gso10g2230 707 SMART arm_5 228 268 IPR000225 GO:0005515
Gso10g2230 707 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Gso10g2230 707 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 703 IPR044282 -
Gso10g2230 707 SUPERFAMILY ARM repeat 438 611 IPR016024 -
Gso10g2230 707 Gene3D - 44 351 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2230 Gso-Chr10 49395010 49404323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2230 199 507 U-box Gene Family AT3G46510 25.484 6.91e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Gso10g2230 BTB 7.2e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2230 - - gmx:100784348 1354.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1147 20 41249925 41258474 Gso10g2230 10 49395010 49404323 GST
Gso1g2042 1 56829408 56836593 Gso10g2230 10 49395010 49404323 PCT
Gso11g0039 11 325154 333531 Gso10g2230 10 49395010 49404323 PCT
Gso10g2230 10 49395010 49404323 Gso1g2042 1 56829408 56836593 PCT
Gso10g2230 10 49395010 49404323 Gso11g0039 11 325154 333531 PCT