Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2197 ATGTTCTCTTCCACATATGACTCCAACTTTTTCCCTAACTTCCCTTTGTCTACTTACCCAATCCTTCCTTTTCTCATTGAATCTGAAAATGATTTTGCAAGCCACACTCTTCTTGTTGAGGACCCTCTTGTTGTTCCCCTCACACATGATCCTCCTCCATTCCCTGAAGAAACCGTTGCCAATTTTGCAGTTGCTGATCATCACTGCACTGCCATGCTTGATAATCAACACGATGCAGCAGCAAACACTAACTATGGTTCCCACTATGGTAGCAGCATTTCCAATTTCCTCACCCATCAGAAACCTGCAGCAGCCACAGCCAAAAAAGACAGGCACAGTAAGATTCACACATCTCAGGGTTTGAGGGACCGGAGGGTGAGATTATCAAGCGAAATAGCCCGGAAGTTCTTTGATCTTCAGGACATGTTAGAGTTTGACAAACCAAGTAACACCCTCGAGTGGCTCTTCACAAAGTCTGAGAATGCAATCAAAGAACTAGCCCGAAGTAAGCATAGCGGTAGTGTTAGTACTGGGGGTGACAAGTCTTCACGCGACCCTTCTGGGGATTCAAATAACAACTTCAACAACAACAAATCAATGGTGGGTGGTGGTGTTGGTGATGGTTCTAAAGGGAGGAAGCTGAAATGGGCACAGAGGGATGATGCTTGTATTCAGAACAAAAAAGAGTCAAGGGAAAGGGCAAGGGCAAGGGCAAGAGAAAGGACTTGTTTCAAGAAGTGTAGCAGTATAAGGGTGCAGCAGCAGAAGGACTTTGATGAAAGGTGCCCTGCAACAACAAACACTACTCAAATGCTGCACCAATTGTGGTCTTCCATTCAGCCTGAACCTGAAGAACCTCGTGCAAGATGGGTTCAGCCTTATTATAACCCTTATTTCGTTGATGATAATGAAGCTCCAAGAGATCATGGCTTTAACGTCATTGAAGAATCTATTATGATAAAAAGGAACATGAAGCCGTTATCTCAACCAAACCTTGTGATCCCTAGGGAAGCAAGTTTCAACAACAATGAGTTCCCCCTATTACCCTATTCCACTACTCCAAACTGGGAGAGTACTAATGGGGCCGTTAACTATTGTGGAATAAGCACCATGAATCTATCTACGTGTTTCATGAACCCGTGA 1143 0.4427 MFSSTYDSNFFPNFPLSTYPILPFLIESENDFASHTLLVEDPLVVPLTHDPPPFPEETVANFAVADHHCTAMLDNQHDAAANTNYGSHYGSSISNFLTHQKPAAATAKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELARSKHSGSVSTGGDKSSRDPSGDSNNNFNNNKSMVGGGVGDGSKGRKLKWAQRDDACIQNKKESRERARARARERTCFKKCSSIRVQQQKDFDERCPATTNTTQMLHQLWSSIQPEPEEPRARWVQPYYNPYFVDDNEAPRDHGFNVIEESIMIKRNMKPLSQPNLVIPREASFNNNEFPLLPYSTTPNWESTNGAVNYCGISTMNLSTCFMNP* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2197 380 ProSiteProfiles R domain profile. 228 245 IPR017888 -
Gso10g2197 380 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 376 IPR005333 GO:0003700
Gso10g2197 380 MobiDBLite consensus disorder prediction 170 202 - -
Gso10g2197 380 Pfam TCP family transcription factor 106 247 IPR017887 -
Gso10g2197 380 ProSiteProfiles TCP domain profile. 108 166 IPR017887 -
Gso10g2197 380 MobiDBLite consensus disorder prediction 167 217 - -
Gso10g2197 380 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 18 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2197 Gso-Chr10 49027721 49029144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2197 101 242 TCP Transcription Factor Family AT1G67260 43.590 5.11e-24 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso10g2197 TCP 1.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2197 - - gmx:100777204 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1188 20 41739921 41743576 Gso10g2197 10 49027721 49029144 GST
Gso10g2197 10 49027721 49029144 Gso16g1622 16 36880212 36882095 PCT