Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2192 ATGGACACGCCAGATAGGAGCAAGATCAACACCCCTCTTTCCCAATTTGAGGATTCGCCTGTATTTAACTATATCAGTAATCTATCTCCTATAGAGCCCGTTAAATCAGTTCACCTTACTCATACATTCAACTCATATAGCTTTTCATCACCTCCATCGGTTTTCACATCACCCCATGGCAACTGTCACAAGGAATCCAGATTCCTCAAGAGGCATAACCTTTTGGAGACATCCAAACCTAAGGTTTGGTCTGAAGATGTAAATAGTGTTTATTCATCTGAAGAGACTCTTGCAGATTCAACTCAAGCATGTCATGAATCAAGTGAGCAACAGGAAAATACTGCTCAAAAGATTTCCATTGGAGATGCCTCAATTGAGCCATGTAACGAAAACCCAAATATCTCAATTGAGCTTCCACAAGTCTTAAAATGTAATTTGGGTAGCCCTGGGTATGAACCTCTACTCTGCTGTGATGAGGCTAACTCTCTTTTGGAATTACCCGGCAATGGCAAGCCAGCATCAGATGTTGCTTATGTTCCAGAAGGCTCTGAAAAAGATTCAATTGAGGGTGAGATGCATCTTCTGGGGTTATGTCAGATTGAGGAGGCAAAAGTTGAAGGCCCAAATTGTGGTGTGGATAGTTTAATTACTGAAGTCTCTGATCTGTTAATGCTTAGCCCCCCAAATGTGACAGAAGCTTTTAAGGGTTTAAATAAACAATTAAATCCTTCAATAGAGCTTGGCAATTTCATGACTTTGATACCACAATCTGCCACCAATGATGGTCAACAAATGCACATTGGTAATGCAGTTGCTTCTGGTTCAGAACATGAAATTGAAGATCATCCTTCTGAATCAGCAGCTGCCACAGGCACAGGTCAGAGACAGGACAATCTTGCCAATGTTGCTTTGGTGGCTAGCCATCCAAGTGAAAATATGGATAATAAGCTTGTTTATGCGAGACACCGTGGTATACGAAGACGCTGTCTAGATTTTGAGATGGCCATTGTGCAATGGAAGAACCCAGCTGATAATTCAAACACCAACTCAAGTACAGCAATATCTGATGAGGGGAATGTTGGTAATGAAAAGCAACTGCTTCCCACAAAACACAGTGGGGATTCACGGAGGTGTGTTTTGCCAGGAATTGGTTTGCACTTGAATGCACTTGCAAGCTTAAAGGATTGCAAAAATGTAAAAATTGAAAATTTGTCATCTGGAAGGCAACCTAATCTGCACTGCTCTCCTTCATCTGTGCAACTCTCTGCAAGCCAAGAACTTCAACTATCATTGGTACCTGCATCGTCAGAAATAGATTTGGTGCCATCAGAGAATGAGGTTCAGCCTGGTGAAGATTTCCAGCAGAATAGCCCAAAAAAGAAAAGGTGCAAGTTGGAACCAGCTGGGGAAGGGGAGTCTTGCAAGCGTTGTAATTGTAAGAAATCAAAATGTTTGAAGCTTTATTGTGAGTGCTTTGCTGCTGGAGTCTACTGCATAGAACCTTGTGCATGCCATGATTGCTTCAATAAACCTATTCATGTTGAGACTGTTCTTCAAACTCGCCAGCAGATTGAGTCTCGTAATCCACTTGCATTTGCTCCTAAAGTCATACGAAGTTCTGATTCTGTATCTGAAATTGGGGATGACCCTAACAAAACTCCAGCTTCAGCACGACACAAAAGAGGATGTAATTGCAAGAAATCAAGCTGCCTAAAGAAATATTGTGAATGTTATCAGGGTGGTGTTGGTTGCTCCATAAGCTGTAGATGTGAAGGATGCAAGAACACATATGGTAGAAAGGATGGTTCTGTTCCTTCTGGATTAGAAGCCGAGCCCGAAGAAGAAACAGAAGCATGCGAAAAGGGTGTGGTGGAAAATGCTTCCCTGAAAACTGAAACAAAGAATACCGAAGACCATCCGGACCAATCTCTTGCTACAACACCATTACCACTTTCCAGATCATTGCTTCCATTATCCTTTTCATCAAAGTGTAAGCCACCAAGATCTTCTGTTATTACCATCTCCAGTTCCGGATTGCTTGTGGGGCAAAAGCTTGGGAAATCAAATGCTCCGTGGTCTCAATCTCAACCTAAATGTGAAAAGCCTTTGGAAACTGTTCCAGATGATGACTCTTCTGTCACCTGCATCAAAACTTCTTCTCCCAATGGCAAGAGGATCTCCTCTCCTAATTGTAAGGTGGGATCATCACCTACTCGCAGAGGTGGGAGGAAGTTGATATTACAATCTATCTCTTCATTTCCTTCTCTCACCCCTCACCATTAG 2283 0.4223 MDTPDRSKINTPLSQFEDSPVFNYISNLSPIEPVKSVHLTHTFNSYSFSSPPSVFTSPHGNCHKESRFLKRHNLLETSKPKVWSEDVNSVYSSEETLADSTQACHESSEQQENTAQKISIGDASIEPCNENPNISIELPQVLKCNLGSPGYEPLLCCDEANSLLELPGNGKPASDVAYVPEGSEKDSIEGEMHLLGLCQIEEAKVEGPNCGVDSLITEVSDLLMLSPPNVTEAFKGLNKQLNPSIELGNFMTLIPQSATNDGQQMHIGNAVASGSEHEIEDHPSESAAATGTGQRQDNLANVALVASHPSENMDNKLVYARHRGIRRRCLDFEMAIVQWKNPADNSNTNSSTAISDEGNVGNEKQLLPTKHSGDSRRCVLPGIGLHLNALASLKDCKNVKIENLSSGRQPNLHCSPSSVQLSASQELQLSLVPASSEIDLVPSENEVQPGEDFQQNSPKKKRCKLEPAGEGESCKRCNCKKSKCLKLYCECFAAGVYCIEPCACHDCFNKPIHVETVLQTRQQIESRNPLAFAPKVIRSSDSVSEIGDDPNKTPASARHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNTYGRKDGSVPSGLEAEPEEETEACEKGVVENASLKTETKNTEDHPDQSLATTPLPLSRSLLPLSFSSKCKPPRSSVITISSSGLLVGQKLGKSNAPWSQSQPKCEKPLETVPDDDSSVTCIKTSSPNGKRISSPNCKVGSSPTRRGGRKLILQSISSFPSLTPHH* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2192 760 MobiDBLite consensus disorder prediction 686 743 - -
Gso10g2192 760 MobiDBLite consensus disorder prediction 273 295 - -
Gso10g2192 760 MobiDBLite consensus disorder prediction 686 700 - -
Gso10g2192 760 MobiDBLite consensus disorder prediction 343 359 - -
Gso10g2192 760 SMART CXC_2 472 513 IPR033467 -
Gso10g2192 760 SMART CXC_2 558 599 IPR033467 -
Gso10g2192 760 MobiDBLite consensus disorder prediction 343 373 - -
Gso10g2192 760 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 475 510 IPR005172 -
Gso10g2192 760 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 561 596 IPR005172 -
Gso10g2192 760 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 760 IPR044522 GO:0003700
Gso10g2192 760 MobiDBLite consensus disorder prediction 711 735 - -
Gso10g2192 760 ProSiteProfiles CRC domain profile. 473 598 IPR005172 -
Gso10g2192 760 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2192 Gso-Chr10 48951096 48956834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2192 11 760 CPP Transcription Factor Family AT3G22780 41.731 7.43e-149 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Gso10g2192 TCR 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2192 - - gmx:100820491 1489.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1192 20 41820136 41825879 Gso10g2192 10 48951096 48956834 GST