Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2188 ATGGCCTCTCATTCCCCAAAGAGAGAAGGCCCTTATTATCTTAATATTGTACTATTCCTTACCATTCTCATCTCCATCATCAACCCTTCACACCAAGACCCTTCTTCCCCTCTCCCCCCAATAAACCCAAGACTCACCAAAGCCTACACAGCACTCCAAGCATGGAAACACAAGATCACCTCAGACCCCAAAAACTTCACCTTAAACTGGTGTGGCCCCAATGTTTGCAACTACACTGGCATATACTGTGCACCAGCCCTAGATGATCCTCACATCTACACTGTTGCTGGAGTTGACCTAAACCATGCCACCATATCTGGCTCATTGCCAGAAGAACTTGGCCTCTTAACTGACCTATCACTTCTCCACATAAACTCCAACCGTTTCTGTGGTTCTCTTCCCACTAGCTTCGACAAACTTCACCTCCTCCATGAACTTGACATCAGCAACAACCAATTCTCGGGACCATTCCCCGAAGTTGTTCTTTGCATCCCTAACTTAAAATACTTGGATATCAGATTCAACAACTTCCACGGCAACGTTCCCTCGCGCCTCTTCGATGTCAAACTCGATGCACTTTTCATCAACAACAACAATTTCCAATTCTCGTTGCCCAATAATTTCGGGAACAGTACTGCTTCTGTGGTCGTGTTTGCGAACAATGACTTAAAAGGGTGTCTTCCTTCGAGTTTGGTTAAAATGAAGGGTACCCTTAACGAGATTATCATCACCAACAGTGGCTTAACGGGGTGTTTGCCTAGTGAGATAGGGGATTTGGACATGGTCACGGTGTTTGATGTGAGCTTCAACAAGTTGGTTGGAGAACTGCCTGAGTCATTGGGAAGAATGAAGAAGTTGGAGCAGCTGAATGTGGCGAATAACGAGTTGTCTGGTGAGATTCCTGAGAGTGTTTGCATGTTGCCGAGGTTGGAGAATTTCACGTACTCTTATAACTACTTCTGCAGTGAGTCACCAACGTGTCTCAAGTTGAAGGATAAGGATGATACCAAGAATTGTATTCCTTATAGGCCATTGCAAAGGTCACTGGATGAGTGTAAGGCTTTTTATGCACATCCTGTTCATTGTAGTGCCTTTGGTTGTGCATCGCCGCCGCCGCCACCTCCTCCTCCTCCGCCGCCGCCGCCACCGGCAACTTACCACCACTATCCCTGA 1173 0.4663 MASHSPKREGPYYLNIVLFLTILISIINPSHQDPSSPLPPINPRLTKAYTALQAWKHKITSDPKNFTLNWCGPNVCNYTGIYCAPALDDPHIYTVAGVDLNHATISGSLPEELGLLTDLSLLHINSNRFCGSLPTSFDKLHLLHELDISNNQFSGPFPEVVLCIPNLKYLDIRFNNFHGNVPSRLFDVKLDALFINNNNFQFSLPNNFGNSTASVVVFANNDLKGCLPSSLVKMKGTLNEIIITNSGLTGCLPSEIGDLDMVTVFDVSFNKLVGELPESLGRMKKLEQLNVANNELSGEIPESVCMLPRLENFTYSYNYFCSESPTCLKLKDKDDTKNCIPYRPLQRSLDECKAFYAHPVHCSAFGCASPPPPPPPPPPPPPPATYHHYP* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2188 390 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 22 374 - -
Gso10g2188 390 SUPERFAMILY L domain-like 48 328 - -
Gso10g2188 390 Gene3D Ribonuclease Inhibitor 48 214 IPR032675 -
Gso10g2188 390 Gene3D Ribonuclease Inhibitor 215 341 IPR032675 -
Gso10g2188 390 MobiDBLite consensus disorder prediction 369 390 - -
Gso10g2188 390 Pfam Leucine rich repeat N-terminal domain 50 83 IPR013210 -
Gso10g2188 390 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 6 22 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2188 Gso-Chr10 48925764 48927354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2188 27 375 Leucine-rich Repeat extension Gene Families AT3G22800 66.667 9.74e-164 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2188 - - gmx:100818195 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1195 20 41850836 41852303 Gso10g2188 10 48925764 48927354 GST