Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2186 ATGGCTGGTAGGTTGCCTGGTGTTGGGTTGCTTGCAAGGAAGAGAACAGAGAAGAACTATAGATATGAACACCAATACCTTCCCACATGTCGACACTCCTATTACCCAAGAGAATCGTCATCATTCGACCCACCATGGATTCCACTCACTGTCTTAGATGAAACTGCTCTCAAGGCCAGACAAAGGCTTCACAAGAAGCTTGAACACTTCTTTTCCTCATACAGGTCAAGTGAGAATCCAAGAAAAGAAGGAAAAGTGAGCCAAAACAGGTACGAGAAGAAGGATGGAGGAATAGGTAGGAAGTTATTAGAGTGTTCATGGTTATTGCGTGGGAACAAGTTGAAGAAAGATAGAAAAGTGTGTGCCGTGTGCCTAGAAGATTTGGGGCTAGAGCAACAGGTTATGAACCTTTCATGCTCCCATAAGTACCATTCAGCATGCCTTCTTCGCTGGCTTGCATCCCATCCCCATTGCCCTTATTGTCGAACCCCTGTTCAGCCCTCACCTCATATCAATACTTAA 522 0.4502 MAGRLPGVGLLARKRTEKNYRYEHQYLPTCRHSYYPRESSSFDPPWIPLTVLDETALKARQRLHKKLEHFFSSYRSSENPRKEGKVSQNRYEKKDGGIGRKLLECSWLLRGNKLKKDRKVCAVCLEDLGLEQQVMNLSCSHKYHSACLLRWLASHPHCPYCRTPVQPSPHINT* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2186 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 172 IPR013083 -
Gso10g2186 173 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 49 164 - -
Gso10g2186 173 ProSiteProfiles Zinc finger RING-type profile. 121 162 IPR001841 -
Gso10g2186 173 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 49 164 - -
Gso10g2186 173 Pfam Ring finger domain 120 162 IPR001841 -
Gso10g2186 173 SUPERFAMILY RING/U-box 120 168 - -
Gso10g2186 173 SMART ring_2 121 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2186 Gso-Chr10 48909975 48911707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2186 113 162 C3H Transcription Factor Family AT3G02340 44.000 8.19e-10 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2186 - - gmx:100817134 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1197 20 41888024 41890460 Gso10g2186 10 48909975 48911707 GST