Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2178 ATGAATCCTCATGGTCTAGTGAAGGAAGAGTTTCTTGGAGAAAGTTCTTCCTTTTGTGGTGGCTATGATCCGCAGCCAATAATGGTTGTTCCCCAACCAATTGAGGGGCTTCATGAAACTGGTCCTCCACCATTCCTCACAAAAACATACGACATAGTTGATGACCCTTCCACGAACCATATAGTTTCCTGGAGCACAGGGAACAACAGCTTCGTTGTGTGGGATCCACAGGCCTTTTCGGTAACCCTTCTCCCCAAATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTCAACACCTATGGGTTTAAAAAGGTTGATCCAGATAAGTGGGAGTTTGCTAATGAGATGTTTCTTAGAGGGCAAAGGATTCTTCTGAAGAACATTAGAAGGAGGAAAGCAAATCATCATCAATCCCATCAGCACGCGATGCAGCAAGGTGTAGAAGAGCCTTTTGTTGAGGTGGGGCAGTTTGAATTAGATGGAGAAATTGATCGGTTAAGGCGAGACAGGCAAGTTCTTATGGTGGAGTTGGTGAAGCTCAGACAACAGCAACAAAGTACCAAATCTCACCTCCAAGAAATGGAAGGAAGGATCAAAATGACTGAACAGAAACAGAAACAAATGATGAATTTCTTGGCCAGGGCAATGCAGAATCCAAATTTCGTGCAACAATTGGCTCAGCAAAAGGAGTGGAGAAAGGAGCTTGAGGAAGTTTTTTCCAACAAGAAGAGGAGGCCTATTGATCAAGGGCCTAATGTTGTTGAAGTTGCCGATGACGATGATGAGTTATTAGGTTGTGCTGAAGAGTGTTCAGATTTCGTTAAACTTGAACCGCAGGAATATTACAGTGATGACAAGGTATTAGAGTTTGAGGTACCTGACTTGGACCTTGCTTTGAATCTCGATGAGGAGAATATTGAAAGCCAGAAGAGAATAATGGAGGAAGAACATGTTCAACTAGAAAATAGTAGAGAGAGATATATTGATGAAGTGTTTTGGCAAGATTTGCTCAATGAGGGTATAGAAGATCAAGGTGTACTAGGTGTTGAAGATGTAGATGTATTGGCCAAGCAACTAGGTTATTTGGCCTAA 1101 0.4233 MNPHGLVKEEFLGESSSFCGGYDPQPIMVVPQPIEGLHETGPPPFLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSVTLLPKFFKHNNFSSFVRQLNTYGFKKVDPDKWEFANEMFLRGQRILLKNIRRRKANHHQSHQHAMQQGVEEPFVEVGQFELDGEIDRLRRDRQVLMVELVKLRQQQQSTKSHLQEMEGRIKMTEQKQKQMMNFLARAMQNPNFVQQLAQQKEWRKELEEVFSNKKRRPIDQGPNVVEVADDDDELLGCAEECSDFVKLEPQEYYSDDKVLEFEVPDLDLALNLDEENIESQKRIMEEEHVQLENSRERYIDEVFWQDLLNEGIEDQGVLGVEDVDVLAKQLGYLA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2178 366 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 8 350 - -
Gso10g2178 366 Coils Coil 306 333 - -
Gso10g2178 366 Coils Coil 166 186 - -
Gso10g2178 366 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g2178 366 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g2178 366 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 8 350 IPR027725 -
Gso10g2178 366 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Gso10g2178 366 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g2178 366 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g2178 366 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso10g2178 366 Gene3D - 37 135 IPR036388 -
Gso10g2178 366 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2178 Gso-Chr10 48817618 48820075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2178 23 366 HSF AT3G22830 54.324 2.97e-125 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso10g2178 HSF_DNA-bind 1.8e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2178 K09419 - gmx:100811941 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1203 20 41984841 41987410 Gso10g2178 10 48817618 48820075 GST
Gso1g1991 1 56435066 56438741 Gso10g2178 10 48817618 48820075 PCT
Gso11g0086 11 702196 705722 Gso10g2178 10 48817618 48820075 PCT
Gso10g2178 10 48817618 48820075 Gso1g1991 1 56435066 56438741 PCT
Gso10g2178 10 48817618 48820075 Gso11g0086 11 702196 705722 PCT