Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2168 ATGCAGCTTCTTCACTCCGACGAACCCGCGCCCGAGCGTGGCGACTCGCCGGAGAAACCCGACGACCCTAACGCTGACACCGATTCCCTCGACCCCGGAACCGACGATGGCGCCGCTCTCGACGTGACCGGAAAAAGCGTCGAATTTCCGGCGGCGGAGAACGCCGGGGACTCCGCGGAGAGCCTTTACGTGTACAAGAACGTTTACAGCTTGATTCCGAAGTCGGTGTCGCGGCTCGCGCGGTTGCGAACGTTGAAGTTCTTCGGAAACGAGATTAACCTTTTTGCGCCGGAATTCGGGAACTTGACGGCGTTGGAGTGCTTGCAGATGAAGATTTCCTCGCCGGGGATTGGAGGCTTGCAGTTGCACACGCTCAAGGGTTTGAAGGAACTCGAACTCTCCAAAGGACCTCCCAGACCTTCGGCTTTTCCGATTTTGACCGAGATTTCGGGTCTCAAGTGTTTGACCAAGCTTTCCATTTGCCATTTCTCTATTCGATACCTTCCTCCGGAAATTGGATGCTTGAAGAAACTGGAGTATCTTGATCTCTCGTTCAATAAAATGAAGACATTGCCGGCGGAGATTAGTTATTTGAAAGGCTTGATATCGATGAAGGTTGCGAATAATAAATTAGTGGAACTGCCGGCAGCGATGTCTTCTCTGTCAAGGTTGGAGAGATTGGACCTGTCGAATAATAGGTTGACTTCGTTAGGGTCCCTTGAACTTGCCTCAATGCATAGACTTCAAGAGTTAAATCTTCAGTACAACAAGCTGCTTGGGATTTTCCAAATTCCTTCATGGATATGTTGTAATATGGATGGAAATGATAAAGCTAGATGCAAAGATGATTGCAGTTCTTCTGTTGAAATGGATCTCTATGAAAGCAACTTTCAGGAAAATGATGAAACCCTTTCTGACGGCCCTCATAATACCTCATCAAGCATGTTAACAAGCTCCTCGTCTAGCAGCAGATGTTTTGCTTCCCGGAAGTCAGGCAAACGGTGGAAAAGGCGACATCATTTACAGCAGAAAGCTCGTCAAGAACGCTTGAACAATAGTAGAAAGTGGAAAGCTGTAGATCATGATGACCAGTTGTTGAGCAAGAAGATTCACAGAATTTCTGAACCAGAAAATCATGATAGTCTTGCTTCTGAAAGTTGTGCAGAAATTGTATCAGAGAATGGGAGCCTGGATGATAATAATAAAAGAATATCCTCTGAACGAGCAGTAAATGACAATGCAATTGATAATGATAACAATGATGAAGTAATTACTGAAAAGCAGTTTTCTGGAGAAGATTGCTGCACTACCGAAAGCAAAGATGAAAAAGAGGAATCCTTGTGCTCCTTAGATAAGAGGCCAAGTGAACAGGATGAAGCATCTTGTTTAGAACTTTTGGAGTGTGTTTCTAAATCAAAGAGACATTTAGATCGTGATCTTGATAATCCTAAACCATGCAAGTCTAGAAAGTCAATTAGTTCTAGTTCATTATTGTCTTGCAAGTACAGCAAGATCTCATTTTGTGGCATTGAAGACCATCTATCAGATGGCTTTTATGATGCAGGACGAGATCGGCTGTTTATGCCTCTTGAGTGTTATGAGCAAAATCATTGTCTTGCTTCTCGTGAAGTCATCCTTTTGGACAGAAAAATCGATGAAGAGTTGGATGCTGTTATGCTAGCTGCTCAGGCATTGGTTTATAATTTGAAGAAGTTAAATGGTTTAAGCAGATATGGGAACCAGGATGGGGTTGATAACTTGCAGATGGCATCACTGCTTGCACTCTTTGTATCTGATCATTTTGGTGGCAGTGATAGAAGTGGTATTGTAGAAAGGACACGGAAATCTGTGTCCGGTTCAAACTATAATAAGCCTTTTGTCTGTACATGCTCAGCTGGAAGCAGCACCAGTATAAGTTCTCCCACTGAACCAGTTGCAAACACCATAGAAGATATCACTCTTTCGAAGATGTCGGAAAAATCTCTCGACTCTATAAAAAAAAGGCGAAATTCGATCATAATTCCAATTGGCTCTGTGCAGTATGGTGTATGTAGACATAGAGCTCTGCTTTTTAAGTATTTATGTGATCACATGGAGCCACCAGTTCCTTGTGAGCTTGTCAGGGGTTACCTAGATTTTTCACCACATGCCTGGAATATCATTCTGATTAAGAGGGGTGCTACATGGGTTCGAATGCTGATTGATGCTTGTCGACCTCTTGATATAAGAGAAGAGAAAGATCCTGAATATTTTTGCAGGTACATACCTCTTAATCGAACCACAATTCCTATATCATCTATAGGAAGTCCAGGTCCTGATTATTCTTTTCCATCTCTCACTACATGTGATGAACTTGAGACAAAGGCTTCAACTACTTTAGTTAAATGCAAATTTGGATCAGTTGAGGCTGCAGCAAAGGTGCGTACTTTGGAAGAGCAGGGGAGTTCGGCAGACAAAATTAAAAACTTCGAATATAATTGTTTGGGAGAAATTAGAATTCTTGGTGCTTTAAAACACCCTTGCATAGTGGAAATGTACGGACACCAAATTTCATGTCAATGGTCTGTCTCAGCTGATGGTAATCCTGAACACCGTGTATTAAGATCTGCAATTTTTATGGAGTATGTGGAAGGGGGCTCCTTAAAAAATTATCTGGAGAAGCTGTCAGAAGCTGGTGAAAAGCATGTTCCTGTGGAGTTGGCTTTGCATATCGCCAAAGATGTCTCATGTGCTTTGTCAGAGCTGCACTCAAAGCACATAATTCATCGTGACATAAAAAGTGAAAACATACTGTTTAATTTGGATAGGAAGAGAGATGATGGAACTCCCACTGTGAAGCTCTGTGATTTTGATAGTGCAGTGCCACTAAGATCAACTTTACATGTGTGTTGTATTGCTCATGCGGGAACACCTCCTCCCTGTATATGTGTTGGAACACCTCGGTGGATGGCTCCAGAGGTTATGCGGACTATGTATAAAAAAAACTCCTATGGATTGGAAGCTGACATTTGGTCGTTTGGATGCTTGCTTTTGGAGATGCTGACTCTGCAAATTCCATATTCTGGACTTTCAGATTCACACTTCCTTGATAGTCTGCAGATGGGTAAACGACCACAATTGACTGATGAGCTGAGAGTATTGAGTTCAATGAATGGACCCACAATGATTCCATCTGGTGAAGAGCTGGAAAAATCAGATGCTGGGGTAGACATGCTGAAATTCCTTGTTGATTTGTTTCATAAGTGCGTGGAAGAAAATCCAAGCAAACGTCCTACAGCTGAAGAAATCCATAAAATGGTGCTTGAACACACAGATCGCTTACAAATCTAA 3330 0.427 MQLLHSDEPAPERGDSPEKPDDPNADTDSLDPGTDDGAALDVTGKSVEFPAAENAGDSAESLYVYKNVYSLIPKSVSRLARLRTLKFFGNEINLFAPEFGNLTALECLQMKISSPGIGGLQLHTLKGLKELELSKGPPRPSAFPILTEISGLKCLTKLSICHFSIRYLPPEIGCLKKLEYLDLSFNKMKTLPAEISYLKGLISMKVANNKLVELPAAMSSLSRLERLDLSNNRLTSLGSLELASMHRLQELNLQYNKLLGIFQIPSWICCNMDGNDKARCKDDCSSSVEMDLYESNFQENDETLSDGPHNTSSSMLTSSSSSSRCFASRKSGKRWKRRHHLQQKARQERLNNSRKWKAVDHDDQLLSKKIHRISEPENHDSLASESCAEIVSENGSLDDNNKRISSERAVNDNAIDNDNNDEVITEKQFSGEDCCTTESKDEKEESLCSLDKRPSEQDEASCLELLECVSKSKRHLDRDLDNPKPCKSRKSISSSSLLSCKYSKISFCGIEDHLSDGFYDAGRDRLFMPLECYEQNHCLASREVILLDRKIDEELDAVMLAAQALVYNLKKLNGLSRYGNQDGVDNLQMASLLALFVSDHFGGSDRSGIVERTRKSVSGSNYNKPFVCTCSAGSSTSISSPTEPVANTIEDITLSKMSEKSLDSIKKRRNSIIIPIGSVQYGVCRHRALLFKYLCDHMEPPVPCELVRGYLDFSPHAWNIILIKRGATWVRMLIDACRPLDIREEKDPEYFCRYIPLNRTTIPISSIGSPGPDYSFPSLTTCDELETKASTTLVKCKFGSVEAAAKVRTLEEQGSSADKIKNFEYNCLGEIRILGALKHPCIVEMYGHQISCQWSVSADGNPEHRVLRSAIFMEYVEGGSLKNYLEKLSEAGEKHVPVELALHIAKDVSCALSELHSKHIIHRDIKSENILFNLDRKRDDGTPTVKLCDFDSAVPLRSTLHVCCIAHAGTPPPCICVGTPRWMAPEVMRTMYKKNSYGLEADIWSFGCLLLEMLTLQIPYSGLSDSHFLDSLQMGKRPQLTDELRVLSSMNGPTMIPSGEELEKSDAGVDMLKFLVDLFHKCVEENPSKRPTAEEIHKMVLEHTDRLQI* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2168 1109 Pfam Leucine rich repeat 203 258 IPR001611 GO:0005515
Gso10g2168 1109 SMART LRR_sd22_2 221 242 - -
Gso10g2168 1109 SMART LRR_sd22_2 175 200 - -
Gso10g2168 1109 PRINTS Leucine-rich repeat signature 178 191 - -
Gso10g2168 1109 PRINTS Leucine-rich repeat signature 221 234 - -
Gso10g2168 1109 MobiDBLite consensus disorder prediction 8 26 - -
Gso10g2168 1109 SMART LRR_typ_2 175 198 IPR003591 -
Gso10g2168 1109 SMART LRR_typ_2 221 244 IPR003591 -
Gso10g2168 1109 SMART LRR_typ_2 79 101 IPR003591 -
Gso10g2168 1109 SMART LRR_typ_2 245 271 IPR003591 -
Gso10g2168 1109 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 60 1104 - -
Gso10g2168 1109 SUPERFAMILY Protein kinase-like (PK-like) 794 1100 IPR011009 -
Gso10g2168 1109 ProSiteProfiles Leucine-rich repeat profile. 177 198 IPR001611 GO:0005515
Gso10g2168 1109 SUPERFAMILY RNI-like 62 272 - -
Gso10g2168 1109 MobiDBLite consensus disorder prediction 329 344 - -
Gso10g2168 1109 MobiDBLite consensus disorder prediction 300 328 - -
Gso10g2168 1109 Pfam Protein kinase domain 818 1098 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2168 1109 ProSitePatterns Serine/Threonine protein kinases active-site signature. 920 932 IPR008271 GO:0004672|GO:0006468
Gso10g2168 1109 Pfam Ethylene-responsive protein kinase Le-CTR1 653 725 - -
Gso10g2168 1109 PANTHER BNAC08G43810D PROTEIN 60 1104 - -
Gso10g2168 1109 MobiDBLite consensus disorder prediction 1 41 - -
Gso10g2168 1109 SMART LRR_bac_2 198 217 - -
Gso10g2168 1109 SMART LRR_bac_2 175 194 - -
Gso10g2168 1109 SMART LRR_bac_2 221 240 - -
Gso10g2168 1109 Gene3D Transferase(Phosphotransferase) domain 1 778 1108 - -
Gso10g2168 1109 MobiDBLite consensus disorder prediction 300 352 - -
Gso10g2168 1109 Gene3D Ribonuclease Inhibitor 48 292 IPR032675 -
Gso10g2168 1109 SUPERFAMILY Cysteine proteinases 680 738 IPR038765 -
Gso10g2168 1109 SMART serkin_6 779 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2168 1109 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Gso10g2168 1109 ProSiteProfiles Protein kinase domain profile. 787 1100 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2168 Gso-Chr10 48739769 48747793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2168 799 1103 MAP Kinase Kinase Kinase AT5G66850 29.221 3.82e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Gso10g2168 Pkinase 7.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2168 - - gmx:100819959 2164.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1210 20 42049356 42057351 Gso10g2168 10 48739769 48747793 GST