Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2165 ATGGCCTCTAAAATCGAAAGCGAGAATTCAACCGATACTTCTCCATCATCGCCAAAGAACATATACAAAGATCCAGATGATGGGCAGCAGCGCTTTTTGCTTGAATTGGAGTTTGTTCAGTGCCTTGCCAATCCTACCTACATCCACTATTTGGCCCAAAATCGATACTTTGAGGATGAAGCATTCATTGGATACTTAAAGTATCTTCAATATTGGCAACGCCCTGAATATATTAAATTTATTATGTATCCTCATTGCCTCTATTTTCTTGAGCTGCTTCAGAATGCAAATTTTCGCAATGCAATGGCGCATCCAACCAATAAGGAACTGGCACACAGACAACAATTCTACTTCTGGAAGAACTATAGGAACAATCGGCTAAAACACATTTTACCAAGATCCCTTCCTGAACTTAGCGCCACACCTGCAGCTCCTGCTCCTGCTTCAACCTCATCTCAGGCACCTGTGTCTGCACTACCACCAGTACCTGCAACAAGTGTTGCTGTGACAGCAACACCTTCTCAAGCTCCTTCTCCAATGCCATATGGTATGCCCCCTGGCTCTGGTCTTGCAAAAAATGACATGAGGAATCCTACAGTTGATAATAGAAGGAAGAGAAAGTGA 624 0.4311 MASKIESENSTDTSPSSPKNIYKDPDDGQQRFLLELEFVQCLANPTYIHYLAQNRYFEDEAFIGYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRNAMAHPTNKELAHRQQFYFWKNYRNNRLKHILPRSLPELSATPAAPAPASTSSQAPVSALPPVPATSVAVTATPSQAPSPMPYGMPPGSGLAKNDMRNPTVDNRRKRK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2165 207 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 17 119 IPR038089 -
Gso10g2165 207 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 8 207 - -
Gso10g2165 207 Pfam SOH1 29 122 IPR008831 GO:0003712|GO:0006355|GO:0016592
Gso10g2165 207 MobiDBLite consensus disorder prediction 1 20 - -
Gso10g2165 207 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 8 207 IPR008831 GO:0003712|GO:0006355|GO:0016592
Gso10g2165 207 MobiDBLite consensus disorder prediction 1 22 - -
Gso10g2165 207 MobiDBLite consensus disorder prediction 165 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2165 Gso-Chr10 48677731 48680548 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Gso10g2165 Med31 2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2165 K15153 - gmx:100527879 404.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2165 10 48677731 48680548 Gso10g2165 10 48677731 48680548 ECH
Gso20g1213 20 42110940 42114124 Gso10g2165 10 48677731 48680548 GST