Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2154 ATGTTTCCTTTACAACGCGGCAATGAGCTGGTAATCCATTTTTCTAATGGTCTCTACCCGCAGCACAAAATCTCCCAAGATCTCATTCGGGACGATCAAAATATCGATCAATCTCCCCATGTCGGCTATTCTGATAAAAAATGGCGTACAAGCCGCCCAAAAAAACTATTTTATCATGAGGCTGCAGCTACCAGCCACGCTAATTCTTCTAACCAAGAATATGCTAAAAAGATGGTTCATAGAGAGATTGAAAGGCAAAGGAGGCAAGAAATGGCTACCCTTCATGCCTCTCTTAGATCCCTTCTCCCTCTTCGCTTCATCAAGGGAAAGCGTTCCATATCTGATCAAATGAACGAGGCAGTGAATTACATAAATCACCTTCAGAAGAATATTAAAGAGTTGAGTGACAAGAGGGATAAGCTGAAGAAGAAACCCTCCATAAATTCCACCCCTGAAGGCCATGAGAATTGCAAGCATGTATCTAGTGGTTTCACTATCCATCAGAATAGTGGTGGAGCTGTGGGGATTGAAATTAGTGGATTCAGTGAGGAAGAGGTTCCACTTTCAAAATTACTTGAACTAGTGTTAGAAGAGAGACTTGAAGTTGTTAGTTGTCTTTCAACCAAAGTCAATGGCAGATTACTCCACAGTTTGCAGTGTGAGGTTGACAATTCCGACAGTGTAGATCTATCTGAGCTGAGAAGGAAATTTTCCAATCGTGTTTGGGTGGGCACTTACAAGCGCTTGACCGAAAACCTTCTAAACAGAAGCTGCAAATATTCATGGGTATCTTCTACCTGCATGCGACGGGATTCTGAGTGA 822 0.4234 MFPLQRGNELVIHFSNGLYPQHKISQDLIRDDQNIDQSPHVGYSDKKWRTSRPKKLFYHEAAATSHANSSNQEYAKKMVHREIERQRRQEMATLHASLRSLLPLRFIKGKRSISDQMNEAVNYINHLQKNIKELSDKRDKLKKKPSINSTPEGHENCKHVSSGFTIHQNSGGAVGIEISGFSEEEVPLSKLLELVLEERLEVVSCLSTKVNGRLLHSLQCEVDNSDSVDLSELRRKFSNRVWVGTYKRLTENLLNRSCKYSWVSSTCMRRDSE* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2154 273 Pfam Helix-loop-helix DNA-binding domain 76 128 IPR011598 GO:0046983
Gso10g2154 273 MobiDBLite consensus disorder prediction 137 156 - -
Gso10g2154 273 Gene3D - 66 152 IPR036638 GO:0046983
Gso10g2154 273 Coils Coil 117 144 - -
Gso10g2154 273 CDD bHLH_AtORG2_like 76 152 - -
Gso10g2154 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 127 IPR011598 GO:0046983
Gso10g2154 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 146 IPR036638 GO:0046983
Gso10g2154 273 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 239 IPR015660 GO:0003700|GO:0006357
Gso10g2154 273 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2154 Gso-Chr10 48587124 48590752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2154 80 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 41.011 3.87e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g2154 HLH 4.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2154 - - gmx:100804315 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2154 10 48587124 48590752 Gso10g2154 10 48587124 48590752 ECH
Gso20g1224 20 42216477 42217826 Gso10g2154 10 48587124 48590752 GST
Gso16g1613 16 36772365 36774137 Gso10g2154 10 48587124 48590752 PCT
Gso9g1238 9 35531021 35533003 Gso10g2154 10 48587124 48590752 PCT
Gso10g2154 10 48587124 48590752 Gso16g1613 16 36772365 36774137 PCT
Gso10g2154 10 48587124 48590752 Gso9g1238 9 35531021 35533003 PCT