Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2153 ATGAATCCTTTACACCCCACTGATGAGTTGTACTTTCAGATAGCACCAGATAATAATTATTATTCCCTACCAATCCAAACTACCCCAGAAAATCAGATCTTGCATGATCCTGTGATGGATGGAAGCGCCCTAATCCATTTTACGAGTCAAATGGGAACCAAGGGCAAGCAAAGAGAAGATTTTAAGACTACAACCATAGATGAAAACAAGAAGTGGATGCATAGAGAGACAGAAAAACAAAGAAGGCAAGAAATGACCAGGCTTTGCACCAACTTTAGATCTCTCCTTCCTCTTGAATACATCAAGGGAAAGCGCTCAATTTCTGATCACATGCATGAGGGTACAAATTACATCAAGTACCTTCAGAATAAGGTAAAACAGTTGCAAGCCACGAGGGACAAACTTATGAAGTTGTCCAATTTGAGTCCCGTTGGTTCTGAGAGTGGAAGCTTGAGTACTACCCATCTTCCAGTATGCGTCATTGTTCATCCTTGTCCAGGAGGTGTTCAGATTAAGTGTAGTTATAGCTTCGGGAAATATGCGTGTCCTTTGTCAAGAGTGCTAGACATAGTGCTTAAGGAAGGGCTTGATGTGGTAAACTGTACTTCCACCAAACCAGATGATAGGTTCATACACACTATCCGATGTGAGGTTCCGCATATGATGACTGGGAATAATTACACTGAACTGCAAAGAAAGTTTGTTGAAGCAATATCATCTTCAAGTTTGGAGGAGAGACTGTCTGCACCTGAAAACTGCTGA 762 0.4147 MNPLHPTDELYFQIAPDNNYYSLPIQTTPENQILHDPVMDGSALIHFTSQMGTKGKQREDFKTTTIDENKKWMHRETEKQRRQEMTRLCTNFRSLLPLEYIKGKRSISDHMHEGTNYIKYLQNKVKQLQATRDKLMKLSNLSPVGSESGSLSTTHLPVCVIVHPCPGGVQIKCSYSFGKYACPLSRVLDIVLKEGLDVVNCTSTKPDDRFIHTIRCEVPHMMTGNNYTELQRKFVEAISSSSLEERLSAPENC* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2153 253 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 35 246 IPR015660 GO:0003700|GO:0006357
Gso10g2153 253 Gene3D - 61 143 IPR036638 GO:0046983
Gso10g2153 253 PANTHER TRANSCRIPTION FACTOR 35 246 - -
Gso10g2153 253 Pfam Helix-loop-helix DNA-binding domain 71 122 IPR011598 GO:0046983
Gso10g2153 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Gso10g2153 253 Coils Coil 118 141 - -
Gso10g2153 253 CDD bHLH_AtORG2_like 70 142 - -
Gso10g2153 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 137 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2153 Gso-Chr10 48570714 48572233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2153 67 235 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.197 4.08e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso10g2153 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2153 - - gmx:100803786 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2153 10 48570714 48572233 Gso10g2153 10 48570714 48572233 ECH
Gso20g1225 20 42231718 42233390 Gso10g2153 10 48570714 48572233 GST
Gso16g1612 16 36749402 36757479 Gso10g2153 10 48570714 48572233 PCT
Gso9g1237 9 35501081 35502787 Gso10g2153 10 48570714 48572233 PCT
Gso10g2153 10 48570714 48572233 Gso16g1612 16 36749402 36757479 PCT
Gso10g2153 10 48570714 48572233 Gso9g1237 9 35501081 35502787 PCT