Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2152 ATGCAGTTTAAATGTTTCAGTTGTTTTCTTTGTGAAAAGGAGCAATCAGAAATACAGAATGCCAACAAGAAAAATAGGGACTATCCATGGGAAATATACACCTTGAAGGAGTTGCTTCGTGCAACAAACAATTTTCATCAAGATAGCAAGATAGGAGAGGGTGGATTTGGAAGTGTTTATTGGGGTCGAACAAGTAAAGGCGTCGAGATTGCAGTGAAGCGCTTGAAGACTATGACTGCAAAGGCAGAGATGGAGTTTGCAGTTGAAGTGGAAGTACTAGGAAGAGTGAGGCATAAGAATTTGTTAGGCTTGCGTGGATTCTATGCAGGAGGCGATGAACGGTTGATTGTCTATGATTACATGCCTAATCACAGTTTACTCACCCATTTGCATGGTCAACTTGCCACGGATTGTTTACTAGATTGGCCTAGAAGAATGAGTATAGCAATTGGAGCTGCAGAAGGCTTAGTGTATTTGCACCATGAAGCAAATCCTCACATCATTCATAGAGACATAAAGGCAAGCAATGTTCTTTTAGACACTGAATTTGAAGCCAAGGTTGCTGATTTCGGTTTTGCTAAGTTGATACCAGAAGGTGTAAGCCATCTCACAACAAGGGTTAAAGGCACCCTTGGATATTTGGCGCCAGAGTATGCTATGTGGGGGAAGGTTTCTGGGAGCTGTGATGTTTACAGTTTTGGGATTTTGCTTTTGGAGATTGTGAGTGCCAAGAAACCAATTGAGAAACTCCCTGGTGGAGTGAAAAGGGACATAGTTCAATGGGTCACACCACATGTCCAAAAGGGTAACTTCATTCATATTGCTGATCCAAAGTTGAAGGGGCATTTTGATTTAGAGCAATTGAAATCTGTGGTCATGATAGCTATGAGGTGCACAGATAATAGCCCAGAGAAGAGGCCTACCATGCAAGAGGTGGTGGAGTGGCTCAAGGGTGGTATAGGGAGAAGAAAAAAAGAGATTCCATATTTGAGTTACAAGACTGAAGATGACAAATATGAGGAAAACTATGGAGAGATTAGAACAACGCAGTCCAAATTCAAAATAGCAAGTGATAATGATAAACTTAAAATAAGATAA 1098 0.4098 MQFKCFSCFLCEKEQSEIQNANKKNRDYPWEIYTLKELLRATNNFHQDSKIGEGGFGSVYWGRTSKGVEIAVKRLKTMTAKAEMEFAVEVEVLGRVRHKNLLGLRGFYAGGDERLIVYDYMPNHSLLTHLHGQLATDCLLDWPRRMSIAIGAAEGLVYLHHEANPHIIHRDIKASNVLLDTEFEAKVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSGSCDVYSFGILLLEIVSAKKPIEKLPGGVKRDIVQWVTPHVQKGNFIHIADPKLKGHFDLEQLKSVVMIAMRCTDNSPEKRPTMQEVVEWLKGGIGRRKKEIPYLSYKTEDDKYEENYGEIRTTQSKFKIASDNDKLKIR* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2152 365 Pfam Protein kinase domain 45 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2152 365 SMART serkin_6 45 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2152 365 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 341 - -
Gso10g2152 365 PANTHER OS01G0253100 PROTEIN 5 341 IPR045271 GO:0004714|GO:0006468
Gso10g2152 365 Gene3D Phosphorylase Kinase; domain 1 7 120 - -
Gso10g2152 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Gso10g2152 365 Gene3D Transferase(Phosphotransferase) domain 1 121 326 - -
Gso10g2152 365 SUPERFAMILY Protein kinase-like (PK-like) 26 328 IPR011009 -
Gso10g2152 365 ProSiteProfiles Protein kinase domain profile. 45 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2152 365 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2152 Gso-Chr10 48560047 48562043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2152 26 343 Receptor kinase-like Gene Family AT5G45780 42.378 9.18e-82 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Gso10g2152 Pkinase 9.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2152 - - gmx:100817283 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2152 10 48560047 48562043 Gso10g2152 10 48560047 48562043 ECH
Gso20g1226 20 42249330 42251356 Gso10g2152 10 48560047 48562043 GST
Gso16g1611 16 36745044 36748319 Gso10g2152 10 48560047 48562043 PCT
Gso9g1236 9 35469382 35471925 Gso10g2152 10 48560047 48562043 PCT
Gso10g2152 10 48560047 48562043 Gso16g1611 16 36745044 36748319 PCT
Gso10g2152 10 48560047 48562043 Gso9g1236 9 35469382 35471925 PCT