Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2149 ATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTAACCTTCTCAAAGCGCAGAAATGGTTTGCTCAAGAAAGCTTTCGAGCTATCTGTTCTATGCGATGCTGAAATCGCTCTCGTCATCTTCTCCAGCCGTGGCAAGCTTTTTCAGTATAGTAGCACTGAAATCATTGAGAAGTATCGTCAATGCTGCTTCAACATGTCTCAGACTGGCGATGTAGCTGAACATCAATCGGAGCAGGAGCTTTTGGTATTAAGAGTCAAGCATGAGTCACTCCAGCGGACTCAAAGGAATCTTCTGGGAGAAGAACTAGAGCCACTTAGCATGAAAGAATTGCATAGTTTAGAGAAACAACTGGATAGAACGCTTGCACAAGCTCGGAAGCACCTGACACAGAAGCTGGTATCACGAATTGACGAATTACATGGAAAGGTGCATAGCCTGGAGCAGGCTAACAAGCATTTGGAATCTCAGGAAAGAGGTAAATATACCCAGATTTGTGAAGGTTCTCCTAATGGCCATATTTTGCAAGATAAACAAGTCAATCAGTTTGAATATGGAACAGCAGGTTCGTTTCGGCTTCAGCAAGAGCAAACTACTGCTTCCAAAGGAAAAGAAATAGAGACGATCGAGGACTGGTTGAGGCCAAAGCAGTCATAA 678 0.4395 MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALVIFSSRGKLFQYSSTEIIEKYRQCCFNMSQTGDVAEHQSEQELLVLRVKHESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLAQARKHLTQKLVSRIDELHGKVHSLEQANKHLESQERGKYTQICEGSPNGHILQDKQVNQFEYGTAGSFRLQQEQTTASKGKEIETIEDWLRPKQS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2149 225 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Gso10g2149 225 Coils Coil 118 138 - -
Gso10g2149 225 Pfam K-box region 80 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso10g2149 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso10g2149 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso10g2149 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso10g2149 225 ProSiteProfiles K-box domain profile. 81 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso10g2149 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso10g2149 225 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 221 - -
Gso10g2149 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso10g2149 225 PANTHER MADS BOX PROTEIN 1 221 - -
Gso10g2149 225 SUPERFAMILY SRF-like 2 70 IPR036879 GO:0003677|GO:0046983
Gso10g2149 225 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Gso10g2149 225 Coils Coil 144 164 - -
Gso10g2149 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso10g2149 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2149 Gso-Chr10 48513213 48518016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2149 1 173 MADS-box Gene Family AT3G02310 50.000 6.97e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso10g2149 K-box 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2149 K09264 - gmx:100802197 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2149 10 48513213 48518016 Gso16g1606 16 36649402 36657029 PCT
Gso10g2149 10 48513213 48518016 Gso9g1227 9 35265195 35275284 PCT