Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2136 ATGTTTTCCATCAATCATTTCTCCGCCCCAGATGCGAACTCGCCGGGGTCGGGGTCAGGAACTTCCCGACCGGTACCGGCGCTGTCGGACGAGGATTATTTTCTGGCGGCGAGCAATCCCAAGAAACGCGCCGGGAGGAAGAAGTTCCGGGAGACGCGCCACCCGGTGTACCGCGGCGTGAGGAGGAGGGACTCAGGCAAGTGGGTGTGCGAGGTGCGCGAGCCCAACAAGAAGTCCAGGATTTGGCTCGGGACCTTTCCCACGGCGGAGATGGCGGCGCGTGCGCACGACGTGGCGGCGCTCGCGCTGAGGGGAAGGTCCGCTTGCCTCAACTTCGCCGACTCCGCGTCGCGTCTCCCGGTGCCGGCGACGGCGGAGGCCAGGGACATTCAGAAGGCGGCGGCGGAGGCCGCGGAGGCATTTCGCCCGGGGAAGGATGATGGTGCGGTGGTGGCGACGGCGACGGAGCGTGAAGAAGAAGAAGAAAAGGTTGTACCAGAGTATCTGAGGAACATGGTGCTCATGTCGCCGACGCATTGCTTCGGGAGTGATGAATATGGAAGCGCTGACGTGGAATTCGACGATGCTGAAGTTCGGTTGTGGAGTTACTCCATTTAA 618 0.623 MFSINHFSAPDANSPGSGSGTSRPVPALSDEDYFLAASNPKKRAGRKKFRETRHPVYRGVRRRDSGKWVCEVREPNKKSRIWLGTFPTAEMAARAHDVAALALRGRSACLNFADSASRLPVPATAEARDIQKAAAEAAEAFRPGKDDGAVVATATEREEEEEKVVPEYLRNMVLMSPTHCFGSDEYGSADVEFDDAEVRLWSYSI* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2136 205 MobiDBLite consensus disorder prediction 1 24 - -
Gso10g2136 205 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Gso10g2136 205 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Gso10g2136 205 MobiDBLite consensus disorder prediction 1 26 - -
Gso10g2136 205 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Gso10g2136 205 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Gso10g2136 205 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Gso10g2136 205 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Gso10g2136 205 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Gso10g2136 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 17 205 IPR045277 GO:0003700
Gso10g2136 205 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 17 205 - -
Gso10g2136 205 SUPERFAMILY DNA-binding domain 56 115 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2136 Gso-Chr10 48385695 48387103 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2136 2 142 AP2-EREBP Transcription Factor Family AT5G51990 69.504 1.90e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso10g2136 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2136 - - gmx:100797582 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso10g2136 10 48385695 48387103 Gso10g2136 10 48385695 48387103 ECH
Gso20g1241 20 42453922 42455192 Gso10g2136 10 48385695 48387103 GST
Gso16g1591 16 36511323 36512505 Gso10g2136 10 48385695 48387103 PCT
Gso9g1213 9 34977416 34978612 Gso10g2136 10 48385695 48387103 PCT
Gso10g2136 10 48385695 48387103 Gso16g1591 16 36511323 36512505 PCT
Gso10g2136 10 48385695 48387103 Gso9g1213 9 34977416 34978612 PCT