Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2135 ATGGATGGCAACTCTTTTGGAAACGTGCCACCCCCACCAATACAAGTTCCTGATAACTTGGCTATCTCCTCCTCCTCTTCGCCAACTCCCACGACATCATCTCCGTCTCCGACACCCTCTGGAGGCTTTCGGTACCGCGGGACGCGGTGCCGGAGCGGAAAGTGGGTGTCGGAGATAAGGGAGCCACGTAAAACGAATCGCATTTGGCTGGGGACTTACCCGACAGCGGAAATGGCTGCGGCGGCATATGATGTCGCCGCACTCGCGTTGAAGGGTCCCGACACGCCCGTCAACTTCCCTAATTCGATACTGTCGTACCCTATTCCTGCTTCATTGTCCTCCACGGACATTCGCGCCGCGGCTGCGGCCGCGGCGCAGGCTAGGATCGTGAGGGCGCCGCAGGAGAGTGAGGAAACGGTAAACCCTGATGATGGCGGGCAAGGGTTATCGGAGAGGCGTGAGGAGTACATTGATGAGGATGAGTTGTTGAACATGCCGAATTTGCTCGATGAAATGGCCAGAGGAATGCAGGTTAGTCCCCTTAGGATCACTTCCTATTCTTCAGATGATTCGCCTGGGAATTCTGATGGAGATAACCTTTGGAGTTATACCCTTTGA 618 0.5534 MDGNSFGNVPPPPIQVPDNLAISSSSSPTPTTSSPSPTPSGGFRYRGTRCRSGKWVSEIREPRKTNRIWLGTYPTAEMAAAAYDVAALALKGPDTPVNFPNSILSYPIPASLSSTDIRAAAAAAAQARIVRAPQESEETVNPDDGGQGLSERREEYIDEDELLNMPNLLDEMARGMQVSPLRITSYSSDDSPGNSDGDNLWSYTL* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2135 205 ProSiteProfiles AP2/ERF domain profile. 44 100 IPR001471 GO:0003700|GO:0006355
Gso10g2135 205 MobiDBLite consensus disorder prediction 183 205 - -
Gso10g2135 205 MobiDBLite consensus disorder prediction 1 47 - -
Gso10g2135 205 CDD AP2 44 102 IPR001471 GO:0003700|GO:0006355
Gso10g2135 205 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Gso10g2135 205 MobiDBLite consensus disorder prediction 18 41 - -
Gso10g2135 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 32 203 - -
Gso10g2135 205 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Gso10g2135 205 SMART rav1_2 44 106 IPR001471 GO:0003700|GO:0006355
Gso10g2135 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 32 203 - -
Gso10g2135 205 Pfam AP2 domain 50 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2135 Gso-Chr10 48370025 48371513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2135 45 203 AP2-EREBP Transcription Factor Family AT5G52020 53.073 2.85e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso10g2135 AP2 1.6e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2135 - - gmx:100813560 368.237