Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2133 ATGCAACAAGGGAAAATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATGCCCGGCAGTCAGAGCTGGAGCGGCTTTTTAGACGATATGGGAAGGTTGATAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTATATGGAAGACGAGAGAGATGCTGAGGCTGCAATTCGTGCTCTTGATCGAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAGCATGAACGTGGTGTTAGAAGGCCTGCTAGTTCAAGAAGATCTTCAGCTATTGGGAGGCCATCAAAGACCTTGTTTGTAATTAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAACCATATGGAAAGATTGTCAGTGTGAGGATCAGAAGGAATTTTGCTTTTGTTCAATATGAATCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATTTCTGTCGAGTTTGCTGTTAAAGATGATGATGATAGGAGAAATGGATATAGCCCTGAGAGAGGCCGTGATCGTCAACGTGATAGAAGCCGTGATGGAAGGCGATCACCCAGTCCTTATCGTAAAGAAAGGGGTAGTCCTGATTATGGTCGTGGGCCCAGTCCATATCAGAGAGAGAGGGGTAGCCCTGACTATGGCCGTGACCGTAGCCGTAGCAGAAGCCCCCCTAGGAGGGAGAGAGCTAGCCCTGCTTATGGACGTAGAAGCATTAGTCCATATAGAAGAGAAAGGGAGGGTTCTGAACCTGTTCGTGACTCCAGCCGCAGTCCTTATCACAAAGAGCGAGGGAGAACTGACCATGGCATTTCTCCTTCGCAGAGTCCTGAAGGAAGAGGGAGGAAAAGCCCCCAAAATGGTCACGGTTCTAGCCGTAGTCCTCGTGATACTGGGAAGACTAGCCCTGAAAATGGACATGGCTCTGGAAGTCCTGATGAAAAAGGGAATCCCAGCCCTTACAATGGTTATGGAGGGAGCCCAAATACTGTGCCTGATCCCAGGGACAGTCCCAACTATGGTGGTCCTGAAAGTCCCATGCATGAAAGATACCACAGCCAGTCACCCCCTGCAGAAGAATGA 1125 0.4782 MQQGKMRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRRPASSRRSSAIGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRQRDRSRDGRRSPSPYRKERGSPDYGRGPSPYQRERGSPDYGRDRSRSRSPPRRERASPAYGRRSISPYRREREGSEPVRDSSRSPYHKERGRTDHGISPSQSPEGRGRKSPQNGHGSSRSPRDTGKTSPENGHGSGSPDEKGNPSPYNGYGGSPNTVPDPRDSPNYGGPESPMHERYHSQSPPAEE* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2133 374 MobiDBLite consensus disorder prediction 173 374 - -
Gso10g2133 374 CDD RRM2_AtRSp31_like 101 170 - -
Gso10g2133 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 171 IPR000504 GO:0003723
Gso10g2133 374 Gene3D - 2 91 IPR012677 -
Gso10g2133 374 Gene3D - 92 181 IPR012677 -
Gso10g2133 374 MobiDBLite consensus disorder prediction 224 283 - -
Gso10g2133 374 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 9 374 - -
Gso10g2133 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 67 IPR000504 GO:0003723
Gso10g2133 374 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 164 IPR000504 GO:0003723
Gso10g2133 374 PANTHER BNAC08G47240D PROTEIN 9 374 - -
Gso10g2133 374 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 79 IPR000504 GO:0003723
Gso10g2133 374 MobiDBLite consensus disorder prediction 284 322 - -
Gso10g2133 374 MobiDBLite consensus disorder prediction 173 211 - -
Gso10g2133 374 CDD RRM1_AtRSp31_like 7 78 - -
Gso10g2133 374 SUPERFAMILY RNA-binding domain, RBD 7 175 IPR035979 GO:0003676
Gso10g2133 374 SMART rrm1_1 101 167 IPR000504 GO:0003723
Gso10g2133 374 SMART rrm1_1 8 75 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2133 Gso-Chr10 48349867 48353993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2133 9 166 Eukaryotic Initiation Factors Gene Family AT4G34110 23.699 9.63e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2133 K12893 - gmx:100796509 699.123