Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2123 ATGCAAAATTCATCTTCCTTCTCCTACTCAACTCAAAGGAAAATGGAGGGCCCCAGTGAGATAGGTCTCATTGGAGAAAATTTTGATGCTGGTTTGATGGGGAGGATGAGGGACGATGAGTATGAAAGCCGTTCTGGAAGTGATAACTTTGAAGGCGCATCTGGTGATGATCAGGATGGTGGTGATGATCAGCCACAGAGGAAGAAGAGATACCACAGACACACCCCTCACCAAATTCAAGAGCTTGAGGCTTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTGGATCTAAGTAAGAGGCTTGCTTTGGAGAATAAGCAAGTCAAGTTTTGGTTTCAGAATCGACGAACCCAAATGAAGACCCAACTGGAACGCCATGAGAACATAATGCTTAGGCAGGAGAATGATAAGCTCAGAGCTGAGAACAGTTTGATGAAGGACGCCATGTCAAATCCAGTGTGTAACAACTGTGGTGGCCCTGCTATTCCTGGCCAAATTTCATTTGAAGAGCATCAGATTAGAATTGAGAATGCTAGACTAAAGGATGAATTGAACCGTATATGCGCCTTAGCAAACAAGTTCCTTGGCAAGCCAATCTCATCATTGACCAATCCCATGGCTCTCCCAACCTCAAATTCTGGTCTTGAACTTGGTATTGGAAGGAATGGGATTGGTGGTTCAAGCACCCTTGGCACTCCCTTGCCTATGGGGCTTGATTTGGGAGATGGAGTGTTGGGCACTCAACCTGCAATGCCTGGGATTAGACCAGCATTGGGATTGATGGGAAATGAAGTTCAGCTTGAGAGATCTATGCTTATAGATCTTGCATTGGCTGCTATGGAGGAATTGCTGAAGATGACTCAGGCAGAGAGCCCACTTTGGATCAAGAGTTTGGATGGTGAGAAGGAAATGTTTAACCATGAGGAGTATGCAAGGTTGTTTTCTCCTTGTATTGGTCCAAAACCCACTGGCTATATAACTGAAGCTACAAGAGAAACTGGGATAGTAATCATCAACAGTTTAGCCCTTGTGGAAACTTTGATGGACGCGAATCGATGGGCAGAGATGTTTCCCTCTATGATTGCTAGAGCTATCAACCTCGATGTTATATCTAATGGCATGGGTGGAACAAGAAATGGTGCTCTACAAGTGATGCATGCTGAGGTTCAATTGCTTTCGCCACTAGTTCCTGTCCGTCAAGTAAGATTCATCCGATTCTGTAAGCAGCATGCAGAAGGTGTTTGGGCTGTGGTTGATGTTTCTATTGAGATTGGTCATGATGCTGCTAATGCACAGCCATTCATGAGCTGTAGGAGGCTTCCTTCTGGCTGTATTGTGCAGGATATGCCCAATGGTTACTCCAAGGTTACTTGGCTTGAACACTGGGAGTATGATGAGAATGTTGTACACCAACTTTATCGCCCATTGCTTAGTTCTGGTGTTGGATTTGGTGCTCATAGATGGATCGCTACCCTCCAAAGGCAATGTGAATGCTTGGCTATCCTCATGTCCTCTTCCATTTCAAGTGATGATCACACAGCATTGAGCCAAGCTGGTAGGAGAAGTATGTTGAAATTGGCACAACGCATGACTAGTAACTTCTGTTCCGGGGTTTGTGCTTCGTCCGCTCGGAAGTGGGACAGCCTTCACATAGGGACTCTTGGTGATGACATGAAAGTGATGACTAGGAAAAACGTGGATGACCCTGGTGAGCCTCCTGGGATTGTACTCAGTGCTGCCACTTCTGTTTGGGTGCCAGTGTCACGGCAAAGGCTGTTCGACTTTCTACGTGATGAACGCTTGAGAAGTGAGTGGGACATCTTGTCCAATGGTGGACCAATGCAGGAGATGGTACATATTGCCAAAGGACAAGGACATGGAAACTGCGTTTCTCTTCTTCGTGCTAATGCCGTTAACGCCAACGATAGCAGCATGCTGATTCTGCAGGAAACATGGATGGACGCGTCGTGCTCAGTGGTGGTATATGCACCAGTTGACGTGCAATCACTGAACGTGGTGATGAGTGGTGGAGATTCTGCATACGTTGCACTCTTGCCTTCAGGCTTTGCAATTCTCCCCGATGGCCACTGCAACGACAACGGCTGCAACGGGACTTTACAGAAGGGTGGCGGTGGCAATGACGGCGGCGGAAGCCTTCTCACAGTCGGGTTCCAAATACTGGTGAACAGTCTCCCAACAGCAAAGCTCACAGTGGAGTCAGTGGACACTGTGAACAACCTCATCTCCTGCACCATTCAGAAGATCAAAGCTTCTCTCAGAGTTGCATGA 2298 0.47 MQNSSSFSYSTQRKMEGPSEIGLIGENFDAGLMGRMRDDEYESRSGSDNFEGASGDDQDGGDDQPQRKKRYHRHTPHQIQELEAFFKECPHPDEKQRLDLSKRLALENKQVKFWFQNRRTQMKTQLERHENIMLRQENDKLRAENSLMKDAMSNPVCNNCGGPAIPGQISFEEHQIRIENARLKDELNRICALANKFLGKPISSLTNPMALPTSNSGLELGIGRNGIGGSSTLGTPLPMGLDLGDGVLGTQPAMPGIRPALGLMGNEVQLERSMLIDLALAAMEELLKMTQAESPLWIKSLDGEKEMFNHEEYARLFSPCIGPKPTGYITEATRETGIVIINSLALVETLMDANRWAEMFPSMIARAINLDVISNGMGGTRNGALQVMHAEVQLLSPLVPVRQVRFIRFCKQHAEGVWAVVDVSIEIGHDAANAQPFMSCRRLPSGCIVQDMPNGYSKVTWLEHWEYDENVVHQLYRPLLSSGVGFGAHRWIATLQRQCECLAILMSSSISSDDHTALSQAGRRSMLKLAQRMTSNFCSGVCASSARKWDSLHIGTLGDDMKVMTRKNVDDPGEPPGIVLSAATSVWVPVSRQRLFDFLRDERLRSEWDILSNGGPMQEMVHIAKGQGHGNCVSLLRANAVNANDSSMLILQETWMDASCSVVVYAPVDVQSLNVVMSGGDSAYVALLPSGFAILPDGHCNDNGCNGTLQKGGGGNDGGGSLLTVGFQILVNSLPTAKLTVESVDTVNNLISCTIQKIKASLRVA* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2123 765 CDD homeodomain 67 125 IPR001356 GO:0003677
Gso10g2123 765 ProSiteProfiles START domain profile. 268 504 IPR002913 GO:0008289
Gso10g2123 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 763 IPR042160 -
Gso10g2123 765 MobiDBLite consensus disorder prediction 1 15 - -
Gso10g2123 765 SUPERFAMILY Homeodomain-like 54 125 IPR009057 -
Gso10g2123 765 Pfam Homeodomain 68 123 IPR001356 GO:0003677
Gso10g2123 765 MobiDBLite consensus disorder prediction 1 75 - -
Gso10g2123 765 MobiDBLite consensus disorder prediction 32 46 - -
Gso10g2123 765 Coils Coil 119 146 - -
Gso10g2123 765 Pfam START domain 278 501 IPR002913 GO:0008289
Gso10g2123 765 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 14 763 - -
Gso10g2123 765 SUPERFAMILY Bet v1-like 270 501 - -
Gso10g2123 765 ProSiteProfiles 'Homeobox' domain profile. 65 125 IPR001356 GO:0003677
Gso10g2123 765 SMART START_1 277 501 IPR002913 GO:0008289
Gso10g2123 765 Gene3D - 55 141 - -
Gso10g2123 765 SUPERFAMILY Bet v1-like 529 759 - -
Gso10g2123 765 CDD START_ArGLABRA2_like 272 500 - -
Gso10g2123 765 ProSitePatterns 'Homeobox' domain signature. 100 123 IPR017970 GO:0000981|GO:0006355
Gso10g2123 765 SMART HOX_1 66 129 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2123 Gso-Chr10 48234261 48241078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2123 37 762 Homeobox Transcription Factor Family AT3G61150 60.847 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso10g2123 START 4.5e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2123 K09338 - gmx:100794400 1462.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso1g0129 1 1443731 1450497 Gso10g2123 10 48234261 48241078 ECH
Gso10g2123 10 48234261 48241078 Gso10g2123 10 48234261 48241078 ECH
Gso20g1254 20 42594413 42600732 Gso10g2123 10 48234261 48241078 GST