Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g2121 ATGGCTCTACCCTTAAACCTCGTACTCTCGTACCTCGTCCTGTTCCAGATTTTATTTTGTGCCATTGCAGCAGACCAAAGCAACGACAAGCTTTCCCTCCTTTCCTTCAAAGAGGGTCTCCAAAACCCTCACGTGCTCAACTCATGGCACCCTTCAACGCCGCACTGCGACTGGCTCGGCGTCACGTGCCAGCTCGGCCGAGTCACCTCGCTCTCTCTTCCCAGTCGCAGCCTCAGAGGAACGCTCTCTCCGTCGCTGTTTTCTCTCTCTTCGCTCTCTCTCCTCAACCTCCACGACAACCAGCTCTCCGGCGAGATCCCCGGCGAACTCGGCCGGTTGCCTCGGCTCGAAACTCTCCGACTCGGTTCCAACTCGCTCGCCGGAAAAATACCGCCGGAGGTGAGACTCTTGACGAGCCTCCGCACCCTCGACCTCTCCGGCAACGCCCTCGCCGGAGAAGTGCTGGAGAGTGTCGGGAACTTGACAAGGCTTGAGTTTCTCGACCTGAGTAACAATTTTTTCTCCGGTTCTCTTCCTGCGAGTCTGTTCACCGGAGCGAGGTCTTTGATTTCCGTTGATATCTCGAACAACTCGTTTTCCGGCGTAATCCCGCCGGAAATCGGAAACTGGCGGAACATCAGTGCCCTTTACGTGGGGATTAACAATTTGTCTGGGACTTTGCCGAGGGAAATTGGGTTGCTTTCAAAACTTGAAATTTTCTACTCCCCTTCCTGTTCCATCGAAGGTCCCTTGCCCGAGGAAATGGCCAACCTCAAATCCTTGACAAAACTCGACCTTTCTTACAACCCCCTGAGGTGTTCCATTCCCAACTTCATTGGGGAGTTGGAGAGTTTGAAGATTCTAGACCTTGTGTTCGCCCAGCTTAATGGGTCGGTTCCGGCTGAGGTGGGGAAATGTAAGAATTTAAGGTCTCTCATGCTCTCTTTCAATTCACTTTCTGGGTCACTGCCTGAGGAGCTTTCTGATCTTCCCATGTTAGCCTTTTCTGCCGAGAAGAACCAGCTTCATGGACCTTTGCCTTCTTGGCTTGGAAAGTGGAACAATGTTGATTCTCTTTTGCTCTCTGCTAACCGTTTTTCTGGGGTGATTCCACCTGAGCTTGGGAATTGTTCTGCGTTGGAGCATCTCAGTTTGAGCAGTAATTTGTTGACAGGTCCCATTCCTGAGGAGCTTTGTAATGCTGCCTCACTTTTGGAGGTTGATCTTGATGACAACTTTCTTTCTGGTACTATTGAGGAAGTGTTTGTTAAGTGTAAGAACCTTACTCAGTTGGTTTTGATGAACAATCGAATTGTTGGTTCTATACCTGAGTATCTTTCTGAGCTTCCCTTGATGGTGCTGGACCTTGATTCTAACAATTTTAGTGGGAAGATACCTTCTGGTCTGTGGAATTCATCAACCCTGATGGAATTCTCTGCTGCTAATAACCGTTTGGAGGGTTCTCTTCCTGTGGAGATTGGGAGTGCTGTTATGCTGGAGAGGCTTGTTCTTAGCAATAATCGATTGACAGGTACTATACCTAAGGAAATTGGGAGTCTCACGAGTCTTTCAGTTCTTAATTTGAATGGGAATATGCTTGAAGGGAGTATTCCAACTGAGCTTGGTGATTGTACTTCCCTCACTACACTGGACCTTGGAAACAATCAGCTGAATGGGTCTATTCCTGAGAAACTGGTGGAACTGAGCCAATTGCAGTGCCTGGTACTTTCTCACAATAATCTGTCTGGGTCTATTCCTGCCAAGAAATCTTCCTATTTTCGACAACTTAGCATTCCTGATTTGAGCTTTGTTCAGCACCTTGGTGTGTTTGATCTTTCTCACAATAGATTGTCTGGCCCCATACCTGATGAACTTGGGAGCTGTGTGGTAGTTGTGGATCTCTTAGTCAGCAACAACATGCTTTCTGGTAGCATTCCTAGATCACTCTCGCTCTTGACGAATCTTACAACCTTGGATTTGTCTGGCAACTTGTTGTCAGGTTCCATTCCCCAAGAGTTTGGTGGTGTCCTCAAACTCCAGGGTCTGTATCTGGGACAGAATCAGCTATCAGGTACCATCCCTGAAAGCTTTGGAAAGTTGAGTAGTTTGGTGAAGTTGAATTTGACAGGAAATAAGTTGTCTGGTCCAATTCCAGTTAGTTTTCAGAACATGAAGGGGCTGACTCACTTGGACTTGAGCTCTAATGAGCTCAGTGGCGAGCTTCCATCCTCTCTTTCAGGAGTGCAAAGCCTTGTTGGGATTTATGTGCAGAATAACAGGCTTTCTGGCCAAATAGGGAATCTCTTCTCAAACTCCATGACATGGAGAATTGAGATAGTGAATTTAAGTAACAATTGCTTCAAAGGGAACTTGCCGCAATCTTTGGCAAATCTCTCTTACTTAACAAATTTGGATCTTCATGGAAATATGTTGACTGGAGAGATTCCTTTAGACCTTGGGGATCTAATGCAACTGGAATACTTTGATGTTTCAGGTAATCAACTATCTGGAAGGATTCCAGACAAGTTATGCAGCCTAGTTAATCTGAATCACCTAGATTTGTCTCAAAACAGGTTGGAAGGGCCGATACCAAGAAATGGAATTTGCCAGAACCTATCCAGAGTTAGACTTGCGGGGAACAAAAACCTGTGTGGCCAGATGTTGGGTATAGATTCTCAGGATAAAAGCATTGGCAGATCAATATTGTATAATGCATGGCGTCTTGCTGTAATTGCGGTTACAATCATATTGCTAAGTCTAAGCGTTGCTTTTCTTCTGCATAAATGGATTAGCAGGAGGCAAAATGATCCTGAGGAGCTTAAGGAGCGCAAACTAAACAGTTATGTTGATCACAATCTTTATTTCTTGAGCAGTAGCAGATCAAAGGAACCTTTGAGTATCAATGTTGCAATGTTTGAACAGCCTCTCCTGAAGTTAACTTTGGTGGATATCCTTGAAGCAACTGACAACTTCAGCAAGGCAAATATAATTGGAGATGGAGGTTTTGGAACTGTCTACAAGGCCACTTTACCTAATGGAAAAACAGTTGCTGTGAAGAAGCTTAGTGAGGCTAAAACGCAGGGTCATCGCGAGTTCATGGCTGAAATGGAAACTTTGGGCAAGGTGAAGCATCATAATCTTGTTGCATTGCTCGGATATTGCTCAATCGGCGAGGAGAAGCTCCTTGTTTATGAATACATGGTAAATGGGAGCTTAGATCTTTGGTTGAGAAATAGGACTGGGGCCCTTGAAATCCTTGACTGGAACAAACGTTACAAAATCGCAACCGGTGCAGCTAGAGGATTAGCTTTCCTTCACCATGGTTTCATACCTCACATCATTCACAGGGATGTTAAAGCTAGCAACATCTTACTCAATGAAGATTTTGAGCCAAAGGTTGCAGACTTTGGACTGGCAAGACTTATCAGTGCCTGTGAGACTCATATCACCACTGATATTGCTGGAACATTTGGCTACATTCCACCAGAGTATGGGCAGAGTGGGAGATCCACAACAAGAGGAGATGTCTACAGTTTTGGTGTCATCTTGCTTGAACTAGTGACCGGAAAAGAGCCAACAGGACCAGATTTTAAAGAGATCGAAGGCGGGAACTTGGTTGGATGGGCTTGTCAGAAGATCAAGAAGGGGCAAGCTGTTGATGTTCTTGATCCAACAGTTCTTGATGCTGACTCGAAGCAGATGATGCTTCAAATGCTGCAAATTGCTTGTGTGTGCATATCTGACAATCCTGCAAACAGGCCTACCATGCTTCAAGTGCACAAATTCTTGAAGGGGATGAAGGGAGAGTAG 3810 0.4572 MALPLNLVLSYLVLFQILFCAIAADQSNDKLSLLSFKEGLQNPHVLNSWHPSTPHCDWLGVTCQLGRVTSLSLPSRSLRGTLSPSLFSLSSLSLLNLHDNQLSGEIPGELGRLPRLETLRLGSNSLAGKIPPEVRLLTSLRTLDLSGNALAGEVLESVGNLTRLEFLDLSNNFFSGSLPASLFTGARSLISVDISNNSFSGVIPPEIGNWRNISALYVGINNLSGTLPREIGLLSKLEIFYSPSCSIEGPLPEEMANLKSLTKLDLSYNPLRCSIPNFIGELESLKILDLVFAQLNGSVPAEVGKCKNLRSLMLSFNSLSGSLPEELSDLPMLAFSAEKNQLHGPLPSWLGKWNNVDSLLLSANRFSGVIPPELGNCSALEHLSLSSNLLTGPIPEELCNAASLLEVDLDDNFLSGTIEEVFVKCKNLTQLVLMNNRIVGSIPEYLSELPLMVLDLDSNNFSGKIPSGLWNSSTLMEFSAANNRLEGSLPVEIGSAVMLERLVLSNNRLTGTIPKEIGSLTSLSVLNLNGNMLEGSIPTELGDCTSLTTLDLGNNQLNGSIPEKLVELSQLQCLVLSHNNLSGSIPAKKSSYFRQLSIPDLSFVQHLGVFDLSHNRLSGPIPDELGSCVVVVDLLVSNNMLSGSIPRSLSLLTNLTTLDLSGNLLSGSIPQEFGGVLKLQGLYLGQNQLSGTIPESFGKLSSLVKLNLTGNKLSGPIPVSFQNMKGLTHLDLSSNELSGELPSSLSGVQSLVGIYVQNNRLSGQIGNLFSNSMTWRIEIVNLSNNCFKGNLPQSLANLSYLTNLDLHGNMLTGEIPLDLGDLMQLEYFDVSGNQLSGRIPDKLCSLVNLNHLDLSQNRLEGPIPRNGICQNLSRVRLAGNKNLCGQMLGIDSQDKSIGRSILYNAWRLAVIAVTIILLSLSVAFLLHKWISRRQNDPEELKERKLNSYVDHNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATDNFSKANIIGDGGFGTVYKATLPNGKTVAVKKLSEAKTQGHREFMAEMETLGKVKHHNLVALLGYCSIGEEKLLVYEYMVNGSLDLWLRNRTGALEILDWNKRYKIATGAARGLAFLHHGFIPHIIHRDVKASNILLNEDFEPKVADFGLARLISACETHITTDIAGTFGYIPPEYGQSGRSTTRGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWACQKIKKGQAVDVLDPTVLDADSKQMMLQMLQIACVCISDNPANRPTMLQVHKFLKGMKGE* 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g2121 1269 Pfam Leucine Rich Repeat 163 182 IPR001611 GO:0005515
Gso10g2121 1269 Pfam Leucine Rich Repeat 727 747 IPR001611 GO:0005515
Gso10g2121 1269 Pfam Leucine Rich Repeat 260 281 IPR001611 GO:0005515
Gso10g2121 1269 Gene3D Transferase(Phosphotransferase) domain 1 1067 1269 - -
Gso10g2121 1269 ProSitePatterns Protein kinases ATP-binding region signature. 997 1020 IPR017441 GO:0005524
Gso10g2121 1269 SUPERFAMILY L domain-like 593 885 - -
Gso10g2121 1269 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 88 350 - -
Gso10g2121 1269 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 337 769 - -
Gso10g2121 1269 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 15 113 - -
Gso10g2121 1269 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 779 1267 - -
Gso10g2121 1269 ProSiteProfiles Protein kinase domain profile. 991 1263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2121 1269 Gene3D Ribonuclease Inhibitor 336 593 IPR032675 -
Gso10g2121 1269 Gene3D Ribonuclease Inhibitor 594 894 IPR032675 -
Gso10g2121 1269 Gene3D Ribonuclease Inhibitor 184 335 IPR032675 -
Gso10g2121 1269 Gene3D Phosphorylase Kinase; domain 1 954 1066 - -
Gso10g2121 1269 ProSiteProfiles Leucine-rich repeat profile. 260 282 IPR001611 GO:0005515
Gso10g2121 1269 Pfam Leucine rich repeat N-terminal domain 28 63 IPR013210 -
Gso10g2121 1269 SMART LRR_sd22_2 724 750 - -
Gso10g2121 1269 SMART LRR_sd22_2 258 280 - -
Gso10g2121 1269 SMART LRR_sd22_2 544 570 - -
Gso10g2121 1269 SMART LRR_sd22_2 306 329 - -
Gso10g2121 1269 SMART LRR_sd22_2 798 819 - -
Gso10g2121 1269 SMART LRR_sd22_2 425 448 - -
Gso10g2121 1269 SMART LRR_sd22_2 137 160 - -
Gso10g2121 1269 SMART LRR_sd22_2 846 874 - -
Gso10g2121 1269 SMART LRR_sd22_2 652 673 - -
Gso10g2121 1269 Pfam Protein tyrosine and serine/threonine kinase 994 1263 IPR001245 GO:0004672|GO:0006468
Gso10g2121 1269 SUPERFAMILY Protein kinase-like (PK-like) 972 1263 IPR011009 -
Gso10g2121 1269 SUPERFAMILY L domain-like 49 321 - -
Gso10g2121 1269 SMART serkin_6 991 1263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso10g2121 1269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1113 1125 IPR008271 GO:0004672|GO:0006468
Gso10g2121 1269 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 337 769 - -
Gso10g2121 1269 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 15 113 - -
Gso10g2121 1269 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 779 1267 - -
Gso10g2121 1269 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 88 350 - -
Gso10g2121 1269 SMART LRR_typ_2 377 401 IPR003591 -
Gso10g2121 1269 SMART LRR_typ_2 137 157 IPR003591 -
Gso10g2121 1269 SMART LRR_typ_2 258 282 IPR003591 -
Gso10g2121 1269 SMART LRR_typ_2 89 113 IPR003591 -
Gso10g2121 1269 SMART LRR_typ_2 545 568 IPR003591 -
Gso10g2121 1269 SMART LRR_typ_2 846 871 IPR003591 -
Gso10g2121 1269 SMART LRR_typ_2 652 675 IPR003591 -
Gso10g2121 1269 SMART LRR_typ_2 724 748 IPR003591 -
Gso10g2121 1269 SMART LRR_typ_2 161 185 IPR003591 -
Gso10g2121 1269 SMART LRR_typ_2 700 723 IPR003591 -
Gso10g2121 1269 SMART LRR_typ_2 520 544 IPR003591 -
Gso10g2121 1269 SMART LRR_typ_2 798 822 IPR003591 -
Gso10g2121 1269 SMART LRR_typ_2 306 330 IPR003591 -
Gso10g2121 1269 SMART LRR_typ_2 604 628 IPR003591 -
Gso10g2121 1269 SMART LRR_typ_2 676 699 IPR003591 -
Gso10g2121 1269 PRINTS Leucine-rich repeat signature 727 740 - -
Gso10g2121 1269 PRINTS Leucine-rich repeat signature 846 859 - -
Gso10g2121 1269 Pfam Leucine rich repeat 653 713 IPR001611 GO:0005515
Gso10g2121 1269 Pfam Leucine rich repeat 499 557 IPR001611 GO:0005515
Gso10g2121 1269 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Gso10g2121 1269 SUPERFAMILY L domain-like 339 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g2121 Gso-Chr10 48190748 48194968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso10g2121 24 1264 Receptor kinase-like Gene Family AT5G07280 60.465 0.0 1427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gso10g2121 PK_Tyr_Ser-Thr 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g2121 - - gmx:100808726 2428.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso20g1256 20 42652842 42657015 Gso10g2121 10 48190748 48194968 GST